| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2908 |
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| Symbol | |
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| ID | 4253479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3469521 |
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| End bp | 3471380 |
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| Gene Length | 1860 bp |
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| Protein Length | 619 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638119543 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_735036 |
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| Protein GI | 113971243 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.32821 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.122569 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATATCTA TGGATCATAC TCCGCAGTCG CAACTCAAGC TGTTGCTTGC CAAAGGTAAA
GAGCAAGGTT ACTTAACCTA TGCAGAAGTG AACGATCACT TACCTGCAGA CATGGTCGAT
TCTGACCAGA TCGAAGATAT TATCCAGATG ATAAATGACA TGGGTATTCG GGTGTTTGAA
GAAGCGCCAG ATGCCGATGA CATGATGATG TCGGAAGACA ACACAGACGA AGATGCAGCG
GAAGAAGCCG CAGCCGCCCT TGCCACAGTA GAAAGTGAGC TAGGCCGTAC CACAGACCCT
GTGCGTATGT ACATGCGCGA AATGGGTACC GTTGAACTGC TGACCCGTGA AGGCGAAATT
GTTATCGCCA AACGCATCGA AGAAGGCATC AACACAGTTC AAAGCTCTGT CGCAGAATAC
CCACAAGCGA TCGCCATGAT CCTTGAACAG TACGACCAAT ACGAAGCCGA CGAACTGCGC
CTGTCTGATA TTATCTCTGG ATTTGTTAAC CCGGACGAAG AAGACCTAGG CCCAACCGCA
ACCCATATCG GCTCTGAATT ATCGGAAGAA GATCTTGATG ATGAAGATGA CGATGAAGAA
GATGAAGACG AAGACGGTGA TGGCGACGGC GATGACGATG GCAACAAGGG TCCCGATCCT
GAAGAGGCGC GTGAACGCTT TGGCCAATTA AGAACGGCCT ACGAAAATGC CCTTAAAATC
ATCGAAGCCA AAGGTCGTGA ACATCCTGAA TCGATCAAAG CACTGTTTGA AATCGGTGAG
ATTTTCAAAG AGTTCCGCCT AGTACCCAAG CAGTTCGACC GCTTAGTAAA AAGCATGCGT
TCTATGATGG ACCGTGTTCG TGTACAAGAG CGTCTGCTGA TGAAGCTCTG TGTCGAACAG
GCCAAGATGC CGAAGAAGAA TTTTGTTAAG TTCTTCACCG GTAACGAAAC CAATTTAGAT
TGGTTCGATG CTGAAAAGAA CTCGAACAAG CCTTATGCCG AAGGCTTAAA AATGGTTGAA
GAAGACGTTC AGCGTTGCCG TAGCAAGCTG GCCGCCATCG AAGAAGAAAC TGGCTTAGTC
ATTGCTGCCA TTAAAGACAT CAACCGTCGT ATGTCAATCG GTGAAGCCAA GGCTCGCCGT
GCGAAGAAAG AGATGGTTGA GGCAAACTTA CGTCTGGTAA TTTCTATCGC GAAGAAATAC
ACCAACCGTG GTCTGCAATT CTTGGACTTA ATTCAAGAAG GTAACATCGG TTTGATGAAG
GCAGTTGATA AGTTCGAATA CCGTCGTGGT TACAAGTTTT CGACCTATGC GACTTGGTGG
ATCCGTCAGG CAATCACCCG CTCAATCGCG GACCAAGCCC GTACAATCCG TATTCCAGTA
CACATGATCG AAACCATCAA CAAGCTGAAC CGTATCTCTC GCCAAATGTT ACAGGAAATG
GGTCGTGAGC CTTCTCCTGA AGAACTGGCA GAGCGTATGA TGATGCCGGA AGATAAGATC
CGTAAGGTAC TGAAAATCGC TAAAGAACCT ATCTCCATGG AAACCCCAAT AGGTGACGAT
GAAGATTCGC ATTTAGGTGA TTTTATCGAG GATACTACCC TCGAATTACC ACTGGACAGC
GCCACTAGCG AAAGCCTGAA GAGCGCGACC CATGAGGTAT TAGCTGGCCT AACAGCCCGT
GAAGCGAAAG TACTGCGTAT GCGTTTTGGT ATCGACATGA ATACCGACCA CACGCTGGAA
GAAGTGGGTA AACAATTTGA CGTGACCCGT GAACGTATCC GTCAAATTGA GGCGAAAGCC
CTGCGTAAAC TACGCCACCC TTCACGCTCG GAAATCTTAA AGTCATTCTT AGACGAATAG
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| Protein sequence | MISMDHTPQS QLKLLLAKGK EQGYLTYAEV NDHLPADMVD SDQIEDIIQM INDMGIRVFE
EAPDADDMMM SEDNTDEDAA EEAAAALATV ESELGRTTDP VRMYMREMGT VELLTREGEI
VIAKRIEEGI NTVQSSVAEY PQAIAMILEQ YDQYEADELR LSDIISGFVN PDEEDLGPTA
THIGSELSEE DLDDEDDDEE DEDEDGDGDG DDDGNKGPDP EEARERFGQL RTAYENALKI
IEAKGREHPE SIKALFEIGE IFKEFRLVPK QFDRLVKSMR SMMDRVRVQE RLLMKLCVEQ
AKMPKKNFVK FFTGNETNLD WFDAEKNSNK PYAEGLKMVE EDVQRCRSKL AAIEEETGLV
IAAIKDINRR MSIGEAKARR AKKEMVEANL RLVISIAKKY TNRGLQFLDL IQEGNIGLMK
AVDKFEYRRG YKFSTYATWW IRQAITRSIA DQARTIRIPV HMIETINKLN RISRQMLQEM
GREPSPEELA ERMMMPEDKI RKVLKIAKEP ISMETPIGDD EDSHLGDFIE DTTLELPLDS
ATSESLKSAT HEVLAGLTAR EAKVLRMRFG IDMNTDHTLE EVGKQFDVTR ERIRQIEAKA
LRKLRHPSRS EILKSFLDE
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