| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2907 |
|---|
| Symbol | |
|---|
| ID | 4253478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3467670 |
|---|
| End bp | 3469394 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638119542 |
|---|
| Product | DNA primase |
|---|
| Protein accession | YP_735035 |
|---|
| Protein GI | 113971242 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0358] DNA primase (bacterial type) |
|---|
| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000550507 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.062671 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATAC CTCGTGATTT TATCAATGAG CTAATCGCTC GCACCGACAT TGTCGAACTT
ATCGACCGCA AGGTGCCCTT GAAAAAGGCG GGTAAAAACT ACTCGGCCTG TTGTCCTTTT
CATAGCGAAA AATCACCTTC GTTTACCGTT AGCCGCGATA AACAGTTTTA TCATTGTTTT
GGCTGCGGAG CCCACGGCAA CGCCATCGAT TTTGTGATGG AGTACGACAG ACTCGACTTT
GTCGATGCCA TCGAAGATCT TGCCGGACAA CTGGGCTTAG AAGTCCCAAG GGAACAAGGC
TCGGGTAAAC GCCAAGACGA TGGCCTAAGC CGTGATCTAT ACCGATTAAT GGAAGAAGCG
AGCCGCTTTT TTCAAACTCA ATTAAGACAA CACCAAGATA AACAAAAAGT TATCGACTAC
CTCACCTATC GCGGATTATC CGATGATATT GTTGAGCATT TTGGGATTGG TTTTGCGCCC
GACGGTTGGG ATGGCTTATT AAGCCGCTAC CGACACAGTC AAGATGCACA GGATAAACTC
CTGACCACAG GCATGCTGAT CAGTAATGAC AGCGGTAAAA GATACGACAG ATTCCGTGAC
CGCCTGATGT TTCCTATTCG CGACCGCCGT GGTCGTGTGA TTGGATTTGG TGGCAGAGTA
TTGGGAGATG GCACCCCCAA GTACTTGAAT TCGCCAGAAA CGCCCATATT TCATAAGGGC
AATGAACTCT ATGGCCTGTA CGAGCTAAAG CAACGTCATC GCGATCCCGA TAAGGTACTG
ATCGTCGAAG GCTATATGGA CGTGGTTGCC CTCGCTCAAT ATGGCGTGGA TTTCGCGGTC
GCCTCCCTTG GCACTTCGAC AACGGCGGAA CAATTCCAAT TGCTGCTGCG TAGTGCAAAG
GAAGTGATTT GTTGTTATGA CGGCGATAGA GCCGGTAATG AGGCCGCCTG GCGCGCCTTA
GAAACCGCTT TACCCCTACT AAAACCTGGG GACAAAGTGC GTTTTATGTT TTTACCTCAA
TCAGAAGATC CGGATTCAAT GGTTCGTAAG ATTGGTAAAG ACGCCTTCGA GCAAATGATG
GAAAGTGCCA TCACGCTGCC CGAATTTTTG TTTGATACAT TAGCGACGAA ATTTGGTACC
GATAAAGGTA ACTTAGCCAA ACAAGCCTTT GGCCTAATTG AAAAAATTCA AGATACTGTG
CTGCAAAACC TACTGCTTGA GAACTTAGCT CACAAATTAG GCATGAACAG CTCAGACGAT
ATGAAGAAAA AACTGGGTTT TAGTGTCAAA CAAACTAAGC CCACTACATC AACGGGACTC
AAAGGACGCG GTACGCCATT GCGACTTGCC ATCGCCTTGT TAGTACAGCA TCCCGAGCTA
GGAGTGGGAT TATCCCCACA ACCGGCATTA AACCATCTGC AAATGCCAGG CATCGACTTG
CTGCCATTGC TGTTGGAATT AACACGAGAG CATAGGTTAA ACAGCGCACA ACTACTTGAG
CAATTCAGAG ACAGCCCCCA CAGCGGGACG CTGCATAAAT TAGCCCAATG GGACCATCAA
GTGGCGGATG AAAACCTGCT CGAAAAGTTT AAACAGACCC TGGTTTGGTT GAACAATCAA
TATATTGAAC AACGATATCA GGAATTGAGT CTAAAACAGA CCCATACTAA GGAAGAGAAG
ATCCAGCTGC AGAAGCTGAT CTCAGTCATG AAAGGACTAA ACTGA
|
|---|
| Protein sequence | MAIPRDFINE LIARTDIVEL IDRKVPLKKA GKNYSACCPF HSEKSPSFTV SRDKQFYHCF
GCGAHGNAID FVMEYDRLDF VDAIEDLAGQ LGLEVPREQG SGKRQDDGLS RDLYRLMEEA
SRFFQTQLRQ HQDKQKVIDY LTYRGLSDDI VEHFGIGFAP DGWDGLLSRY RHSQDAQDKL
LTTGMLISND SGKRYDRFRD RLMFPIRDRR GRVIGFGGRV LGDGTPKYLN SPETPIFHKG
NELYGLYELK QRHRDPDKVL IVEGYMDVVA LAQYGVDFAV ASLGTSTTAE QFQLLLRSAK
EVICCYDGDR AGNEAAWRAL ETALPLLKPG DKVRFMFLPQ SEDPDSMVRK IGKDAFEQMM
ESAITLPEFL FDTLATKFGT DKGNLAKQAF GLIEKIQDTV LQNLLLENLA HKLGMNSSDD
MKKKLGFSVK QTKPTTSTGL KGRGTPLRLA IALLVQHPEL GVGLSPQPAL NHLQMPGIDL
LPLLLELTRE HRLNSAQLLE QFRDSPHSGT LHKLAQWDHQ VADENLLEKF KQTLVWLNNQ
YIEQRYQELS LKQTHTKEEK IQLQKLISVM KGLN
|
|---|
| |