| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2895 |
|---|
| Symbol | |
|---|
| ID | 4253466 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 3456640 |
|---|
| End bp | 3457773 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638119530 |
|---|
| Product | general secretion pathway protein B |
|---|
| Protein accession | YP_735023 |
|---|
| Protein GI | 113971230 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.000294797 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATTT TACTCGATGC GGTAACCCGT AATAAGCAGC AACAAACTTC ACCCTTACCC
GATGCGGTAT TAACGCCGAG GGCAAGTTAT CCTTCGGCGC GTAAATCGGC GTTTCCTGTG
GCTAAGTTAT CCTTGCTTGC CGTCGCGGTG GCGCTGGGGG TGGGTGTGGC GTGGGGTGTG
GCGAATTGGC AACAGCAACA TTCACAGTTA ATTGTGAAGG CATATGAGGT GCCTGCAGGC
TCCAGTAATT CAAGCCAGGC GAATGCGAGT AATCTTATCG CTGAAAAGGC ATCACAGACA
GGCTCAGCCC TATTAACGAC GCTTCAGCAG TCGAAGCCAG AAGGGACCAA CGCGTCTGCT
GGTAATGCTA CAAGCGCTTC CTTGCAAGAT GATTTATCGA CGCAAATGAC AGTAGAATCC
TCTGGATTTA GGTTAGCGGG CAAAGTGGCA TTGCCGAGGG AGCAGGTATT AAATGAGGCG
CCTGCAAACG TGCAGTCTTA TCAGTATCCC AACATGAGTT CGGCTCTATC TACCACAGCA
TCCGCTTCTG CGAGTGCGGA TCCTAGCTAC GATGACTATC TGGCGACGTC TGCCGCCTTA
GATGAAACGA CTCGAACACA GCAACCCTCA GTTGAAGACA TTGCGCCACA GGAGACGAGT
GAGTCTGAGC CTATTATGTT GGGTGCTAAT GCAAATCGTC AGGGCTTAGC GACACTCGAG
GCACTGCGTG AGCAAGTCAA TGCCGCTGCG GCCGATGTGG GCTTAGAGAC GGCGCAGAGC
CGCAAAGAGG ATGAGTTAGT CGCGAATTTT CAGGATGCGC TCAAGGATGT GGAATATGTA
AAGGCGGCTA AGACGCCGGT AACTGAGCCC AAGCTTGATC CTATTCCTAA GGTCGAAAAC
GACGATATTC CTAAATATGG GCAACTGCCT GCAGGGTTAC AACTCCAAGT ACCTGAATTT
AATATTGTTG CCCACGTTTA TTCGACGGAT GCGAGTCAGC GTTGGTTGAA TGTCGATGGC
GCCGAGTTAC AGGAAGGCGA CCAGATTGGA GGCAAGTTAA AGATTATTGC GATTCGCCCA
CGGGATGTGG TGCTCGAAAT TCAAGGTACG CAGTTTAGGG TGCCTGCTAT TTAA
|
|---|
| Protein sequence | MSILLDAVTR NKQQQTSPLP DAVLTPRASY PSARKSAFPV AKLSLLAVAV ALGVGVAWGV
ANWQQQHSQL IVKAYEVPAG SSNSSQANAS NLIAEKASQT GSALLTTLQQ SKPEGTNASA
GNATSASLQD DLSTQMTVES SGFRLAGKVA LPREQVLNEA PANVQSYQYP NMSSALSTTA
SASASADPSY DDYLATSAAL DETTRTQQPS VEDIAPQETS ESEPIMLGAN ANRQGLATLE
ALREQVNAAA ADVGLETAQS RKEDELVANF QDALKDVEYV KAAKTPVTEP KLDPIPKVEN
DDIPKYGQLP AGLQLQVPEF NIVAHVYSTD ASQRWLNVDG AELQEGDQIG GKLKIIAIRP
RDVVLEIQGT QFRVPAI
|
|---|
| |