| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2883 |
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| Symbol | |
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| ID | 4253454 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3438105 |
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| End bp | 3440255 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638119518 |
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| Product | transcriptional regulator domain-containing protein |
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| Protein accession | YP_735011 |
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| Protein GI | 113971218 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.011265 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000000742237 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGGATA AGAGTAAGTT GAGTTTTTGC TTAGGAAGTT GTCGCATTGA CCCTTCTGAT
AACTCAATTT CATTTCAAAC GCAGGGGGAT GAAACGTCCC AACATGAAAC CGCTAAGGTG
TCACTTCAAC CTAAGTTTAT TGAAGTGCTT AGCTATCTTG CCCTGCGTCA TCCTCATGTG
GTGACCCGTG ATGAGTTGAT CGAAAAAGTG TGGGAGGGCA ATGTTTACGT AGGTACTAAG
GCTCTCACCA ATGCAATTTG GCATTTACGA CAGCAATTAT CGCCCCTCGA GCAGGAGGGC
GGGGTAATTG AAACGGTTCG AAAGGCGGGC TACCGCCTGT TATTGCCCCC TATCTATGAT
AATTCTGATG ATGCCGACAT CGATAAACTG CAAACCACTG AGGCGAAGTT ACAACATACG
ACGCAACGAC TGCATTTGAT GGCGATATTG GTGGGGGCGG TTATCTTAAT TGCAGGTCTA
TTGATTGGCG TGCATCTGTA CCAAGATAAG CAGCGGATGA CGGAGACCCA AATGACAGTG
CTGACCCGAG ATCCGGGGTC GGAGCGTTAT CCTAGGTTAT CCCACGATAG ACGTTGGTTA
GTGTATGGTG CGAGTCGCCC TGGAGTGACT TCTAGCCTGT ATCTGAAAGA TTTTAAACGT
GAAGATATCC CCGCCCGTCA GTTAACTCCT CTCTCGTCTG CAGAGCTGCG AGCGGTGTGG
AGTTTAGACG ATACTAAGCT GTTTTTTGCC TCCCGCACCC AGGGTACAAG GGAGTGCCAC
ATCACTCAGT TGACCCTTGC GACCAATGAA ACCCTCGCCT TAGCGCCTTG CACGACCGAT
ATGGCGGCGA TAGATATTTC TGCTGACGGC CAATATCTTG CCTATGTCTC CTCCCATGAG
GCGGGGAAGG TGGGTGGCAT CTACCGCTTG TCTTTGGTGC AACCCGACGC CAAGGCTGAA
AGATTATCCT GCGAAGCGCA CTGTAACTAT GAGGACCGGG ATTTAGCTTT CAGTCCAGAT
GGTCGTTGGC TGGCAATAGC GAGGCGCTTT AGTAATATCT CTGAGGATAT TTTTATTCGC
GACTTAGCCA GTGCCAATGA AACACGTTTA ACCCATGGGC TAGAAGATAT TCGCGGCTTG
AGTTGGACGC CTGATAGCCA GTCGCTGGTT TTTGCTACGG AAGACTCTGG TAGTCGCAAC
GGCTTTACTA TCGATATTGA AACGGCCCAT ATTCGCCCAC TCGATGTGGA GGGCATGAGC
TATCCCAGTA GCGTATCCGA TGAGGGCGAG CTGGTTTATC ATCAGTATCG TCGTCAATTC
CAGATGGCGT ATTTTTCCCT CGGTGAATCC GTGCCCGGCA GCTTGTTTCC ATTGCTGTAT
TCCGGCATTA GCCACCGCAA TCCCGATTAT TCCCCTGAGG CGAAACGGAT TGTATTTGTC
TCCAGCGATA CGGGCTATAA CGAGATTTGG ACGTCAGATA TAAACGGCAA AAAACTTGAG
CAACATACTC ATCTCAAGTC GCGCGTAGCT TACCCGCGTT GGTCTCCCGA TGGCGCTAAA
ATCGCCTTTA TCGCCCCCGA TGACAGCAAT GAAGGTAATC GTATTTTTAT TTTAGATTTA
GCCAGTAAAA ATATTACAGC CTTAGCCTCG AGTTATCACA ATCATGGTCG CCCCAGCTGG
AATTGGCAGG GGACGGCGGT GTTGGCATCG ACCACTGATG GCATCACGGA GTTTTATTTA
GACAACAGTA CACCAAGGGT GATCAGTCCT CTGACTATGG CGGTGGGTTT TGCGAAATCG
GCTAACGAAT TTGTATTTAG TCGCTATGGG GTAAATGGTC TTTGGCAGAT TGATCTCACG
CAGCCCGAAC AGGTGCAAGA GATTATCCCG GGGAAGGTGT TTCGTGCGGG CAATAACTGG
GTGCTTACTG CACACGGAGT GTATTTTAAA TCGAGCAATG GTAACGAGCA GCGGCTGAAT
TTTTGGGAGG CGAGCAGTCA GCAGCTGACA TCACTCCTAA GGGTTCCCCG CTCTAGCCTA
AGCGGCTTTG GCTCCATGAC CTATATTCCG GAGTCAAACC GCTTAGTGAT GACACTCGAT
GGCTTCCCGC AGCGGGACAT CATACTGCTT AAACACAAGC TACTTAAGTA G
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| Protein sequence | MKDKSKLSFC LGSCRIDPSD NSISFQTQGD ETSQHETAKV SLQPKFIEVL SYLALRHPHV
VTRDELIEKV WEGNVYVGTK ALTNAIWHLR QQLSPLEQEG GVIETVRKAG YRLLLPPIYD
NSDDADIDKL QTTEAKLQHT TQRLHLMAIL VGAVILIAGL LIGVHLYQDK QRMTETQMTV
LTRDPGSERY PRLSHDRRWL VYGASRPGVT SSLYLKDFKR EDIPARQLTP LSSAELRAVW
SLDDTKLFFA SRTQGTRECH ITQLTLATNE TLALAPCTTD MAAIDISADG QYLAYVSSHE
AGKVGGIYRL SLVQPDAKAE RLSCEAHCNY EDRDLAFSPD GRWLAIARRF SNISEDIFIR
DLASANETRL THGLEDIRGL SWTPDSQSLV FATEDSGSRN GFTIDIETAH IRPLDVEGMS
YPSSVSDEGE LVYHQYRRQF QMAYFSLGES VPGSLFPLLY SGISHRNPDY SPEAKRIVFV
SSDTGYNEIW TSDINGKKLE QHTHLKSRVA YPRWSPDGAK IAFIAPDDSN EGNRIFILDL
ASKNITALAS SYHNHGRPSW NWQGTAVLAS TTDGITEFYL DNSTPRVISP LTMAVGFAKS
ANEFVFSRYG VNGLWQIDLT QPEQVQEIIP GKVFRAGNNW VLTAHGVYFK SSNGNEQRLN
FWEASSQQLT SLLRVPRSSL SGFGSMTYIP ESNRLVMTLD GFPQRDIILL KHKLLK
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