| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2854 |
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| Symbol | |
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| ID | 4253425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3407151 |
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| End bp | 3407729 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638119489 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_734982 |
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| Protein GI | 113971189 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0729603 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGGAC AAATAAGTGA TCAACAATTA GTTGAGCGCG TACAACGGGG AGATAAAAAC
GCTTTTAACC TGTTGGTGCT TAAATATCAG AGTAAAGTGG TGAGCTTGAT TTCACGCTAT
GTGCGTAACC AAGCCGACGT TACCGATGTG GCACAGGAAG CGTTTATCAA AGCTTATCGA
GCTTTGCCAA ACTTTCGTGG AGAAAGTGCG TTTTATACCT GGTTGTACCG CATAGCCGTA
AACACGGCTA AGAATTATCT CGTGTCACAG GGGCGCAGAG CGCCTGCAAA TGATGTGGAT
GCCGAGGATG CCGAATACTA TGAAGGCAGT GATGCGCTAA AGGAGTTTGC CTCCCCAGAG
CGACTAATGT TATCGGACGA AATCAAAAAA GTGGTTTTCG AGACATTAGA AACCTTGCCG
GAAGAATTAC GTATGGCGAT TTCGCTACGT GAACTCGATG GGATGAGTTA CGAGGATATT
GCCATCATCA TGGATTGCCC TGTGGGGACT GTAAGATCTC GTATCTTTCG TGCCCGTGAA
GCAATCGACA AAAAACTCCA GCCATTGCTG GAAGAGTAA
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| Protein sequence | MSGQISDQQL VERVQRGDKN AFNLLVLKYQ SKVVSLISRY VRNQADVTDV AQEAFIKAYR
ALPNFRGESA FYTWLYRIAV NTAKNYLVSQ GRRAPANDVD AEDAEYYEGS DALKEFASPE
RLMLSDEIKK VVFETLETLP EELRMAISLR ELDGMSYEDI AIIMDCPVGT VRSRIFRARE
AIDKKLQPLL EE
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