Gene Shewmr4_2853 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2853 
Symbol 
ID4253424 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand- 
Start bp3406501 
End bp3407124 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content49% 
IMG OID638119488 
Productanti sigma-E protein, RseA 
Protein accessionYP_734981 
Protein GI113971188 
COG category[T] Signal transduction mechanisms 
COG ID[COG3073] Negative regulator of sigma E activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0484485 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATAAAT TAGGTCAAGA ATGGGTATCT GCCGCTGTCG ATGGAGAGAC AGATCTGCAG 
ACTATGGCAG AACTCGCTGC CGATACGCAT TCACATAATA AATGGCGTAA CTATCATGTG 
ATAGGTGATG CTATGCGGGG TGAGTTGCCC CAGACTATGG CGTTAGACCT TTCCGCCAGT 
ATTGCGGCTG CAATCGAGCT TGAGCCTGCC ATTGTCTCGC CTCAAGTAAA CGCACCTGAA 
GTTACAGCGG CTCCACAACA AGTCGCCGTC AATGCTGGAC AAAGCCGTGT TGTGCCCTTA 
TTCAAGCAGT TTGGTCAGTA TGCGATTGCC GCAACTGTGG CCATGTTCGC TATCGTAGGC 
GTACAGAACT TTAACCAAAC TGCCGATGAT GCAGCTTCGC CATCGCCTGT GCTCATTACC 
CGTCCGTTGA TTGGTAGTGC GTCGCCAGTG AGCTTACAGA CAGGTCCAGT GCAGCAAAAT 
CAGAGCTACA CGAATGACCA AATGAATGAG CAACGTCGCC GAATTAATAC TTATATTCAG 
GACCATATGT TGCAACAACG ATTGAATACA GGTGCCGTTG TAGAAGACAA TAGCGAGGTT 
ATTCCCGTTC CTGTCAATCA GTAG
 
Protein sequence
MDKLGQEWVS AAVDGETDLQ TMAELAADTH SHNKWRNYHV IGDAMRGELP QTMALDLSAS 
IAAAIELEPA IVSPQVNAPE VTAAPQQVAV NAGQSRVVPL FKQFGQYAIA ATVAMFAIVG 
VQNFNQTADD AASPSPVLIT RPLIGSASPV SLQTGPVQQN QSYTNDQMNE QRRRINTYIQ 
DHMLQQRLNT GAVVEDNSEV IPVPVNQ