Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2852 |
Symbol | |
ID | 4253423 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3405556 |
End bp | 3406488 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638119487 |
Product | sigma E regulatory protein, MucB/RseB |
Protein accession | YP_734980 |
Protein GI | 113971187 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3026] Negative regulator of sigma E activity |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0395935 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGCGTCTAA TCCTGTTGGC TTTAGTAGCC TTGGTATTCC CTGCAGTGGC GCAGGAAGAT ATGCCTGCTA AAGTCTGGCT TGAAAAAATG AGCCAGGCTT TACAAGAGAA AGAATTTAAA GCATCGATTA TACAACTTCA GGCCGACCAT ATTCGGCCTT TGGTTTATCT TCACGGAAAG GTGAATAATC AGGAAGTTGC GTTTCTTGAG TACCTCAATG GCCCGCCCAA AAATGCGGTC AGAGTGGGCA ATCGAGTCAC CTTTATCGAA CACGATCAAC CCGCCTATAG CATCCTTTCT AATCATATTC AGGGCGTATG GCCTGCGGCT TTCTCGTCAA AGATGAGTGA TTTAGAAGTG GGTTATCAGT TTGTACTCGG TGGTCGTACG CGTATTGCGG GACGTCCCGG TCAAATGATC CGTTTATTGC CAAATGATGA GTACCGTTAC GGTTTCCAAA TTTGGCTGGA TATGGACACC TACCTGCCCC TCAGATACGA CATGCTGACT CAAGATAAAC AATTACTTGA ACAGTTGATG GTGATTGAGC TGATTGAGTT AAATGAGCCG CCATCGATTC TGCAGGAAGC CTATAAGCAA GAATGGCCAG CGGTTATCGA CCAGGCTGAA CGCCAAGATG GACAAAATTG GCAGTTTTCT TGGTTGCCAG CAGGATTTAG CGTTGTGGTG CGTGATCATC ACCGTTTGAT TGGCAGTCAC GAGGCGGTTG AATATATTGC GTTAACCGAT GGCTTAGCCA ATATTTCTGT CTATGTAGCA CGGGCGGGCT CCACGCCATT ACCCGAAGAG TTAATCACTC GTAATGGTTT GTCTTTGGTA TCTGAAAAAG TGGGTAATGC CGAAGTAGTT GCCGTAGGTA AAGTACCGAC CGAAACCCTA GCCCGTATCG CGAAAAGTCT GATGTTAGAA TAA
|
Protein sequence | MRLILLALVA LVFPAVAQED MPAKVWLEKM SQALQEKEFK ASIIQLQADH IRPLVYLHGK VNNQEVAFLE YLNGPPKNAV RVGNRVTFIE HDQPAYSILS NHIQGVWPAA FSSKMSDLEV GYQFVLGGRT RIAGRPGQMI RLLPNDEYRY GFQIWLDMDT YLPLRYDMLT QDKQLLEQLM VIELIELNEP PSILQEAYKQ EWPAVIDQAE RQDGQNWQFS WLPAGFSVVV RDHHRLIGSH EAVEYIALTD GLANISVYVA RAGSTPLPEE LITRNGLSLV SEKVGNAEVV AVGKVPTETL ARIAKSLMLE
|
| |