Gene Shewmr4_2852 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2852 
Symbol 
ID4253423 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3405556 
End bp3406488 
Gene Length933 bp 
Protein Length310 aa 
Translation table11 
GC content46% 
IMG OID638119487 
Productsigma E regulatory protein, MucB/RseB 
Protein accessionYP_734980 
Protein GI113971187 
COG category[T] Signal transduction mechanisms 
COG ID[COG3026] Negative regulator of sigma E activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0395935 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCGTCTAA TCCTGTTGGC TTTAGTAGCC TTGGTATTCC CTGCAGTGGC GCAGGAAGAT 
ATGCCTGCTA AAGTCTGGCT TGAAAAAATG AGCCAGGCTT TACAAGAGAA AGAATTTAAA
GCATCGATTA TACAACTTCA GGCCGACCAT ATTCGGCCTT TGGTTTATCT TCACGGAAAG
GTGAATAATC AGGAAGTTGC GTTTCTTGAG TACCTCAATG GCCCGCCCAA AAATGCGGTC
AGAGTGGGCA ATCGAGTCAC CTTTATCGAA CACGATCAAC CCGCCTATAG CATCCTTTCT
AATCATATTC AGGGCGTATG GCCTGCGGCT TTCTCGTCAA AGATGAGTGA TTTAGAAGTG
GGTTATCAGT TTGTACTCGG TGGTCGTACG CGTATTGCGG GACGTCCCGG TCAAATGATC
CGTTTATTGC CAAATGATGA GTACCGTTAC GGTTTCCAAA TTTGGCTGGA TATGGACACC
TACCTGCCCC TCAGATACGA CATGCTGACT CAAGATAAAC AATTACTTGA ACAGTTGATG
GTGATTGAGC TGATTGAGTT AAATGAGCCG CCATCGATTC TGCAGGAAGC CTATAAGCAA
GAATGGCCAG CGGTTATCGA CCAGGCTGAA CGCCAAGATG GACAAAATTG GCAGTTTTCT
TGGTTGCCAG CAGGATTTAG CGTTGTGGTG CGTGATCATC ACCGTTTGAT TGGCAGTCAC
GAGGCGGTTG AATATATTGC GTTAACCGAT GGCTTAGCCA ATATTTCTGT CTATGTAGCA
CGGGCGGGCT CCACGCCATT ACCCGAAGAG TTAATCACTC GTAATGGTTT GTCTTTGGTA
TCTGAAAAAG TGGGTAATGC CGAAGTAGTT GCCGTAGGTA AAGTACCGAC CGAAACCCTA
GCCCGTATCG CGAAAAGTCT GATGTTAGAA TAA
 
Protein sequence
MRLILLALVA LVFPAVAQED MPAKVWLEKM SQALQEKEFK ASIIQLQADH IRPLVYLHGK 
VNNQEVAFLE YLNGPPKNAV RVGNRVTFIE HDQPAYSILS NHIQGVWPAA FSSKMSDLEV
GYQFVLGGRT RIAGRPGQMI RLLPNDEYRY GFQIWLDMDT YLPLRYDMLT QDKQLLEQLM
VIELIELNEP PSILQEAYKQ EWPAVIDQAE RQDGQNWQFS WLPAGFSVVV RDHHRLIGSH
EAVEYIALTD GLANISVYVA RAGSTPLPEE LITRNGLSLV SEKVGNAEVV AVGKVPTETL
ARIAKSLMLE