| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2828 |
|---|
| Symbol | |
|---|
| ID | 4253399 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3380953 |
|---|
| End bp | 3382956 |
|---|
| Gene Length | 2004 bp |
|---|
| Protein Length | 667 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638119463 |
|---|
| Product | prephenate dehydratase / chorismate mutase |
|---|
| Protein accession | YP_734956 |
|---|
| Protein GI | 113971163 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0077] Prephenate dehydratase
[COG1605] Chorismate mutase
[COG2876] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
|---|
| TIGRFAM ID | [TIGR01797] chorismate mutase domain of proteobacterial P-protein, clade 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAC CACAGCCTTT AAATCAAACG CGAGAACAAA TTACTCACCT CGACAATGAG
CTTCTCTCGT TACTCGCCGA ACGTCGACGC CTAAGCCTTG AAGTGGCCCG CAGTAAAGAA
GTGGATGTGA GACCCATTCG CGACACCCAA AGGGAAAAAG AACTGCTGGC AAGATTAGTC
ACAGCTGGCC GAGAAAAAGG CTTAGATGCC CATTACGTGA TCTCACTGTA TCAAAGCATT
ATCGAAGACT CAGTTCTCAA TCAACAGGCT TATCTCCACG GCCGTGCTAA TCCAGAAACC
CAAAAACAGC AGTACTGTAT TGCTTACCTT GGCGCCCGCG GTTCCTACTC TTACCTTGCC
GCCTCTCGCT ATTGCCAACG TCGTCAAGTT GAGATGCTCG ACTTAGGCTG CCAAAGTTTC
GATGAGATTG TCCAAGCCGT TGAGTCAGGC CACGCCGACT ATGGCTTTTT GCCGATTGAA
AACACTTCGT CCGGCTCTAT CAACGAAGTA TATGACGTGC TGCAACATAC GAGTCTGTCC
ATCGTAGGCG AGACTACTAT CGAAGTCAGC CATTGCCTGT TGGGCAAACC GGGCAGCAAA
CTGAGCGATA TCAAAACTGT TTATGCTCAT CCGCAGCCAA TTAGTCAGTG CAGCCGTTAT
CTGAGCCAGC ACAAGGACTT AAGACTGGAA TATTGCTCAA GCAGCGCCGA AGCGATGGAG
AAGGTCAATC AATCTGCCGA CAATAGCGCC GCTGCGATTG GCAGCACCGA AGGTGGCGCG
CTTTACCAAC TCGAGTCGAT TGAGTCAGGC CTTGCCAATC AAAAGATTAA CCAGAGCCGC
TTTATCGTGG TGGCTCGAAA AGCCGTAGCA GTACCCGAGC AATTACCCGC TAAAACCACC
CTGATCATGG CCACTGGCCA AAAGGCGGGG GCGTTGGTAG AAGCCCTGTT GGTGCTCAAA
GCGCATCAGC TCAATATGAG CAAACTCGAA TCTCGCCCCA TTCCAGGCAC GCCGTGGGAA
GAAATGTTCT ATCTGGATAT CGATGCCAAT ATCTCCAGTG AAGCCATGCA GCAAGGTCTT
AAGCAACTCG AGAGGATCAC GCGGTTTATC AAAGTATTAG GTTGTTACCC CTGCGAAACC
GTCAAACCGA CGCAACTCAG TAATAGCCAA TTACTCATTG AGCCGAACAC CTCAAAAGCT
GAGGTGATAA GCACGGTGAG CCTTGACCCG TCGCCCTATC GCTTCAGTAA GGCGTACAAG
GCGCAGGCGA GTGAAATTCA CTGCGGCCCC TTTACCATTG GCGCAGGCCA TATTGGTGCC
ATTGCCAAAA TCACGCTGAG CAAAAGCCTA CTGCAGCAAG AGTCGTCGCA GGCCGCCTTA
TCCGCCTTTG AGCGCAGAGT AAAACAGCTA AAAGAAGCGG GTTTCCAAGC AGTGATTTTA
GACGGATGTA ACTCACTCGC CTCGGCCGAA GCCATCATCC CTAAGCTGCG CCAAACCCTA
CATCAGTATG ATTTGCTCTG TGTCATAGCC ATCGAACAGG CGACGGATAT GCCATTGGCG
ACAGGTCATG CCGATATGCT GTTCTTAACG GGCAAACAAA TGTTTAATCA ATCCTTGCTG
ACTCAGGCAG GCACCTTGCC GATTCCGCTA TTCCTCGAAC GTAACGATAT GGCAAGTTAT
GATGAATTTA TGGCGGCCAC GGAGACGATT TTAAGTCAAG GTAACCAACA GCTTATCCTA
TGTGACTCTG GCATTCGTAC CTATAACAAT GCCAACTTAC CCACCTTGGA TTTAGCAAGC
CTCATTCAAA TAAAGGCCAA CAGTCATCTC CCCATAGTGA TTAACCCTTG TTATGCCATC
AGCGAAGATG CACTGCCACT GCAAACTCAA GGAATTAAGC AGCTGAAAGC CGATGGCCTA
ATGCTGAATT GCTCCCTCGA AGAAGATAAA GCACATGACT CATTGGCGCT GATGAGCGAG
GTCGTAAGGG AGTTATACCG CTAA
|
|---|
| Protein sequence | MQKPQPLNQT REQITHLDNE LLSLLAERRR LSLEVARSKE VDVRPIRDTQ REKELLARLV
TAGREKGLDA HYVISLYQSI IEDSVLNQQA YLHGRANPET QKQQYCIAYL GARGSYSYLA
ASRYCQRRQV EMLDLGCQSF DEIVQAVESG HADYGFLPIE NTSSGSINEV YDVLQHTSLS
IVGETTIEVS HCLLGKPGSK LSDIKTVYAH PQPISQCSRY LSQHKDLRLE YCSSSAEAME
KVNQSADNSA AAIGSTEGGA LYQLESIESG LANQKINQSR FIVVARKAVA VPEQLPAKTT
LIMATGQKAG ALVEALLVLK AHQLNMSKLE SRPIPGTPWE EMFYLDIDAN ISSEAMQQGL
KQLERITRFI KVLGCYPCET VKPTQLSNSQ LLIEPNTSKA EVISTVSLDP SPYRFSKAYK
AQASEIHCGP FTIGAGHIGA IAKITLSKSL LQQESSQAAL SAFERRVKQL KEAGFQAVIL
DGCNSLASAE AIIPKLRQTL HQYDLLCVIA IEQATDMPLA TGHADMLFLT GKQMFNQSLL
TQAGTLPIPL FLERNDMASY DEFMAATETI LSQGNQQLIL CDSGIRTYNN ANLPTLDLAS
LIQIKANSHL PIVINPCYAI SEDALPLQTQ GIKQLKADGL MLNCSLEEDK AHDSLALMSE
VVRELYR
|
|---|
| |