| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2770 |
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| Symbol | |
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| ID | 4253341 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3317828 |
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| End bp | 3319555 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638119405 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_734898 |
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| Protein GI | 113971105 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.207836 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.331023 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAACT CTCTCGATTT TGATCAGGCA CTCAATGAGC TTGATGTATT ACTGCAATCT
GATTTTAGCG CCGCACAGAA AAAACTGGCC GAATATGAGA CCGCATTTAG CGGATTAACC
CCAACACAAA AAGGCAGACT AAGAATTGAC AGAGCCATTA GTTATATTTT TGTCAGTGAA
TATGCCAAAG CGTTAGACGA TCTGCGTCAG GCCGAAACCT TAATCACAAG TCCTGAATTA
TTAGCGTCGA TTTATAGTTA TCAAGCCACG GTCTATATAG GGATGCGCGA CTATGACAAA
GCCTTGTCGG CTGTTGCCAA AGCATTAGCC TTAGTGGTGA ATATCGATGA TGTTACGATT
AAACGTCACT CCTATCTAAG AATTGCCAAT ATTTATTCTG AAATGGACGC TTATAGCGAT
ATGGGCCTCT ATGCCAATAA AGTGTTACAA CTTGCTCAGG AAACCGATGT CCGCGATATT
TGTCATGCCA AATTGTTGCG GGCTATTTAC TTGCTCGGAG TGAAAAGTCC CGATGCCTTG
GACGCCTTCG AAGATAGCCG TCAATATTGT GATGCGAAGC AATTTCCCCT TTTAGCAACG
ATGTCGATGA AAGGCAAAGG GATGGTTTTG CAGGAGCGGG GTGACAATTT AGGCGCGAGA
GCGATTTTGC TATTAGCGTT AAAAGGGTAT GAAGCTTTTC AATTTCAATT AGAAATCAGC
CATGTGCATG CACTTCTTGC CGAGAATTAC TTTGCAACGG GTGAGCCGGT GCAAGCCAAA
AGTCACGCTG TTAAAGTGCT CACGTTTCCC GATGATAATA GTTATATCGA ACATAAGCAT
ATTGCCTACA GAGTGTTTGC CGAGTTGATG GCCTCGGATA AACAATTTGA ACAAGCCTAT
GAATACTCCA GAAAAGAGCA GCATTATAAT CAACTGATTT TTGACCAATC TAAGATGAAA
ACCCTTGCTT ATCAAGCGGC TAAGTTTAAT GCCGATGAGC AGGCGCGTGA AATCAACTTG
CTGAATAAAG AGCGTGAACT TTACATCGCT CAGCAAACGG TAAAAGAACG TGAGTACACT
AATATGCTGA TGTTTATCAC GATATTAGTT GGCGGGCTGT TTTTCCTCGC GATTTTGTTA
GTCGTGGGCA ATTTGCAAAA ACGGCGTTTT ATGCGTATGG CCAGAATGGA TGCATTGACG
GGCGTGCTTA ACCGTGGTGC TGGGCAAGAT CTGGGGGAAA ATCTGTTTGT GCAAGCCGCT
GCCCGAGGGG GCGATTTTTG CGTGATTTTA TTCGACTTAG ACTATTTTAA ACGGATTAAT
GATTCCTACG GCCATGGTAC GGGTGACTGG GCGCTGAAAA AAGTCGTTGA GGCGTTAAAA
CCCCATGTGC GCAATGGCGA TGTATTTGCT CGGATTGGCG GTGAAGAATT TGCGTTGTTC
TTGCCATACG CCAATGAATC TAAGGGGATG GAAGTTGCCG AACAATGCCG AAGCCGAATT
GAAGCCATTG ATACGCATCT CTCAGGGCAT AAATTTACTA TCACCGCGAG CTTTGGGGTC
AGCGGTATGA CAAAAGAAGA CTTAAGCCTG GATCCTCTGC TACACCGTGC CGATATGGCA
CTGTATGCTG CAAAATCGAA TGGTCGTAAC AGTGTATTTT GTTATGAGGA CGCTTTAGCC
TCCGATAAAC GCGCCACCAA TATTACCAGC CAGTTGGCAA GGCAGTAG
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| Protein sequence | MANSLDFDQA LNELDVLLQS DFSAAQKKLA EYETAFSGLT PTQKGRLRID RAISYIFVSE
YAKALDDLRQ AETLITSPEL LASIYSYQAT VYIGMRDYDK ALSAVAKALA LVVNIDDVTI
KRHSYLRIAN IYSEMDAYSD MGLYANKVLQ LAQETDVRDI CHAKLLRAIY LLGVKSPDAL
DAFEDSRQYC DAKQFPLLAT MSMKGKGMVL QERGDNLGAR AILLLALKGY EAFQFQLEIS
HVHALLAENY FATGEPVQAK SHAVKVLTFP DDNSYIEHKH IAYRVFAELM ASDKQFEQAY
EYSRKEQHYN QLIFDQSKMK TLAYQAAKFN ADEQAREINL LNKERELYIA QQTVKEREYT
NMLMFITILV GGLFFLAILL VVGNLQKRRF MRMARMDALT GVLNRGAGQD LGENLFVQAA
ARGGDFCVIL FDLDYFKRIN DSYGHGTGDW ALKKVVEALK PHVRNGDVFA RIGGEEFALF
LPYANESKGM EVAEQCRSRI EAIDTHLSGH KFTITASFGV SGMTKEDLSL DPLLHRADMA
LYAAKSNGRN SVFCYEDALA SDKRATNITS QLARQ
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