| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2768 |
|---|
| Symbol | |
|---|
| ID | 4253339 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3313295 |
|---|
| End bp | 3315766 |
|---|
| Gene Length | 2472 bp |
|---|
| Protein Length | 823 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638119403 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_734896 |
|---|
| Protein GI | 113971103 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000855789 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.291776 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGTTT TACAGCCTGT ATTTCGCTTA TCGCTTATTG CACTCGCCTG CCTCAGTGCT
TTACCACACA CAGCCTACGC CGATGACACA CCTTCAGCTC GCGATGAAAA CGTCGAGCGT
ATAACGGTAT ATGGCAGACA AAACTCTGTG GTGAAAAACT CAGGACTTGC GACTAAGTCA
GATATGTCCT TAATGGAAAC CCCTGCGGCG GTTGTTATCG TTGACCAGGA GCTGATTAAC
AGCCAAGGAG TCGATAATCT GCAGGACTTA ATTCGCAATA TCAGCGGGGT GACTCAAGCA
GGCAATAACT ACGGCATTGG GGATAACTTA GTGATTCGCG GCCTCGGCGC AAACTACACC
TATGACGGCA TGTATGGCGG TGCCGGCCTT GGCAATACCT TTAACCCCAC TCGCTCCCTA
ACCAATGTGG AATCCGTGGA GGTTTTAAAA GGGCCTGCGA CTGGACTCTA TGGCATGGGC
AGCGCGGGCG GCGTGATCAA CCTGATTGAA AAGAAACCGC AATTTGAATC CAAACACAAA
ATCACCACAG AAGTTGACCA GTGGGATACC TACTCGCTCG CCATCGATAG CACGGGTGGG
ATCGCAGATG ATCTTGCGTA CCGCTTAGTC GCCAAAACCG CCCGCAGTGA AGGCTACCGT
GATTTAGGCG CCGACCGTGA TGAAGTGTTC GGCTCCCTCA AATGGGTATT AAGTGATAGC
CAAGATCTGA TGCTATCCGG CGCGTATATC AAAGACGCCA TTGCCGTTGA CTCCATCGGC
CATCCAATCC GTATCTACAA TGCCGATTCT GTCGGCGGCA AAACCGCGGG CGAAGTCACT
TGGCAAGATT TGATAAACGA TCCAAAGGGT CTAGGCATCC AACTGACCGA CGAGCAGCGT
CAGCAATTAG CGGCGTCACT CGCCAGTGGT GATGGTTTAA CTCCCTACTC CTTCGGTGAC
GCGGGATTAA TTTCTCCCAT GGCAAAAGAT AATGAAGGTG AAGAATTAAG GTTCAAGCTA
ACCCACAATA TCTACTTTAC CGATAATCTG TTCCTCAACC AGCAGTTACA ATATCGCGAC
TACACTACAG GTTTTGCCCG TCAAACAGGG GCTTACAACT ATGTGTATTG GAAGCGCAAA
ATCAAGGTTG GCGGCGTACC GACTGATGTG ATTAACGAAG ATCCCCGCGC GCCACTGGTT
GAAAATGGCG TGCTCTATCC CTTTGCCGCC AGACGTCAGG AATACCGCCA GCTCGATGCC
GAAGAAACCT CATGGCAGTA TTTTGCCGAT CTACGTTACG ACTTCAAAAT CGGCAATATC
GACAACGAAT TACTGGTGAA CGCTAACTAC GAAGATCGCA ACATTCGCCT CGAGCAATTC
TCGATTTACG ATGCGGATCA AGTCATTAAA AACAAACAAG GCGAAGTGAT TTACCGTGGT
TCACTACCGT ACATTTACGA TATCCGCAAT CCAAATTGGG GAACGGGTAA ATTTGCTGAC
TACGATCCAC TCAAAACCGC CAACTACAAC AAAAAAGTCA GCGCTTGGGG TCTAGGCGTG
CAGCATGTGG GTTATTTAGG TTATGGCTTT ACCACCCGTG TTGGCGTGGC CTTTAACGAA
ATCAAACAGA GCTATGAGCA CTTAGGTTTG GATGAGCGCT ACAGCGCGAG TCAAGCGAGC
CCCACTCCTG AGGAAGATAG CAAAGATAAC GGTGTCACCT ATAACTTGGG CTTAACCTAT
ATGCCCATTG ATGATTTATC ATTTTTCGTC AATCACTCAA AGGGCCGCAC CGCCTATAGC
ATCTTAGGTT CTATCACTGG GGAAAATACC GACCGCGAAG ACTCAGAATC CGTTAGTAAC
GATCTCGGCA TGCGCTTTAA AGCCTTTGAC GATCAGATGC TAGCATCGCT GGTGTTCTTT
AAAAGCTCAC GCACTAATGT GCCTTACAAC AACCCAGACT ATAACGCTGG TGTGTCAGGT
GCCGAGGTGC CGGTGTACTT TTACGATGGC AGCGAAGATA CCCAAGGGGT CGAGTTGGAT
CTCAATGCCC ACTTAAACGA TAACTGGCGC ATCAACCTTA ACGGCATGTA TCAAGACGCT
AGGGATAAAC AAAACCCGAA TGACAAAGCC AACTACGACA GCCGTCAAAA AGGTGTGCCC
TATGTGACCG CCAGTGCTTG GGTAACCTAT GGTGCAGACT GGTTTGCCTT AACAAGCCCT
ATTGAGCTGA GTTTAGGCGC CAAGTATGTG GATGATAGAA GCACACACTC AAGCTCATTT
GGCATCCCAG ATGGTTATGT ACCGAGCTAC ACCTTAGTGG ATTCTGCCAT CAGCTACGCC
ACCGACTCTT GGAAGTTACA ATTGAATATC AACAACCTAT TCAATAAAGA CTATTACAGC
AAGGCGATGT TCCTCGGTGG CATGCCAGGC GAAGAGCGTA ATGTGAAACT GCAATATAGC
TACAGTTTCT AA
|
|---|
| Protein sequence | MPVLQPVFRL SLIALACLSA LPHTAYADDT PSARDENVER ITVYGRQNSV VKNSGLATKS
DMSLMETPAA VVIVDQELIN SQGVDNLQDL IRNISGVTQA GNNYGIGDNL VIRGLGANYT
YDGMYGGAGL GNTFNPTRSL TNVESVEVLK GPATGLYGMG SAGGVINLIE KKPQFESKHK
ITTEVDQWDT YSLAIDSTGG IADDLAYRLV AKTARSEGYR DLGADRDEVF GSLKWVLSDS
QDLMLSGAYI KDAIAVDSIG HPIRIYNADS VGGKTAGEVT WQDLINDPKG LGIQLTDEQR
QQLAASLASG DGLTPYSFGD AGLISPMAKD NEGEELRFKL THNIYFTDNL FLNQQLQYRD
YTTGFARQTG AYNYVYWKRK IKVGGVPTDV INEDPRAPLV ENGVLYPFAA RRQEYRQLDA
EETSWQYFAD LRYDFKIGNI DNELLVNANY EDRNIRLEQF SIYDADQVIK NKQGEVIYRG
SLPYIYDIRN PNWGTGKFAD YDPLKTANYN KKVSAWGLGV QHVGYLGYGF TTRVGVAFNE
IKQSYEHLGL DERYSASQAS PTPEEDSKDN GVTYNLGLTY MPIDDLSFFV NHSKGRTAYS
ILGSITGENT DREDSESVSN DLGMRFKAFD DQMLASLVFF KSSRTNVPYN NPDYNAGVSG
AEVPVYFYDG SEDTQGVELD LNAHLNDNWR INLNGMYQDA RDKQNPNDKA NYDSRQKGVP
YVTASAWVTY GADWFALTSP IELSLGAKYV DDRSTHSSSF GIPDGYVPSY TLVDSAISYA
TDSWKLQLNI NNLFNKDYYS KAMFLGGMPG EERNVKLQYS YSF
|
|---|
| |