| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2753 |
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| Symbol | |
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| ID | 4253324 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3288201 |
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| End bp | 3291230 |
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| Gene Length | 3030 bp |
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| Protein Length | 1009 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638119388 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_734881 |
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| Protein GI | 113971088 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAAAA GCATTTTTTT ACCCTTAGTA CAAAATGCGG CGTTATTGCT CGCTCTCGTG
TTTTTATACG ATGCGATTCC TAAAAAGCAT CAGCGGCAGT ATTTTCTGCT GTGGCGGCTG
GGAATAGGAT TACTCATAGG TGGCATAGGC GTCACGATTA TGAGTACCCC ATGGATGTAC
GAGCCCGGCA TTATCTTCGA CACTCGCTCT GTGCTCTTAT GTGTTACCGG CCTCTTTTTT
GGTGGTTTGC CCACTGTGGT GGCGGTGATT ATCACAGGGG CTTATCGATA CAGCATTGGT
GGCGCCGCCA TGTGGGTTGG TCTGGCTGTG ATCATCTCCT CAGGCTTGAT TGGGGTGATA
TGGCGCCAAT ACCGTAAGTC CTATCTTGCC AATATTTCGG GCAGAGAAAT CTTCAGTTTT
GCCTTTGTGG TGCACATAGT GATGTTGCTG TGGTTTTTCC TGCTGCCGAG CCATGTTGCC
ATCCCCGTGC TGCAAAAAAT TATGTTGCCC GTGTTAACCA TTTACCCCCT TGCAACTTGG
CTACTTAGCC GTTTGCTCTC CCGCCGTTTT GAACTTGAGC GTGACGAGCA GATCCGTTTA
CAGGATGATT TTTTGTTCCG CAGCCAATTT AATGTTGGCA ACATTGGGAT TGCCATTACT
GGCGTCGACC AAAAGTGGAT CAAGGTAAAT CCAAGGCTGT GCCAAATGCT GAAGTACTCA
GAGGATGAGT TGCTGCATAT GACCTGGAAA CAGCTCACCC ATCCCGATGA TATAGAGGCC
GATATCGTCA AATTTGAACT TATGCTTGCG GGTAAAATTG ATAACTATGA GATGGATAAA
CGCTTTATCG CCAAGGATAG CGCCATTGTT TATACCCATA TGACGGTGGC CTGTAAGCGC
GCGAACCATC AGGTGTTATT GGTGATTGCG GGCTACTTGG ATGTCACGGC GCAAACCCTA
GCCGATAGGG AAGTGCTCGC CAGCCGTGAA CAACTTGAGC TGGTATTGAG CAGTAGTGAT
CTGGGGGTAT GGGACTGGGA TATCCGCAAT GATCATATCG AGCGTAACGC CCGAAGCGCC
GATATTTTAG GTTGTGACAT CGATATGCTT AACGCCAATA GTCGCCAATG GATGGACTCG
ATTGTGCCCG AGGACAGGCC CAAGGTGCTG CACTCTATCG AAGCCCATAT TCGCGGGGAA
ACGCCGCAAC ATAAGATGGA ATATCGGTTA AAAACCCTCA ACCGTGATAT TCGTTGGATT
TTAGATACCG GCAAAGTCGT GAGTCGCGAT ACCAATAACA ATGCCTTGAG AATGTGCGGT
ACCTATACCG ATATTACCGA AGCTAAGCTG ATTGAAGAAT CCTTAAAGCT CTCAGCATTG
GTCTATGACA ACAGTTCTGA AGCCATGAGT GTGCTTGATG AAACGGGCGT TATTATCACA
GTCAACGCCG CCTTTACCGA GATCACTGGT TATAGTGAAT CGGAAATTCG CGGCCAGCAT
ATTCGCATGC TTTATTGCGA TCTCAACGGC CATGGTTTTT ATACCGAGAT GAATAATGAA
ATCCGCGAAA AAGGCGAGTG GCAGGGGGAA ATGCGCCAAC GACGTAAGAA CAATGAAGAG
TACGTTATTT GGCTGACCAT CAACACCATT AACGATAAAG ATGGCCAACC CTATCGCCGC
GTGGCGCTGT TTTCCGATAT CACAGATAAA AAGCAGAGTG AGCATCTGAT TTGGAAGCAG
GCTAACTATG ACACGCTCAC TGGTTTACCG AATCGGCGGA TGCTGCTCGA ATATTTGGGG
GCGGAAATCA GGAGCGCCGA CCGCAATCGT AATCATTTTG CCTTGATGTT CCTCGATTTG
GATTACTTTA AAGAGGTGAA TGACACCCTA GGCCACGCCA TGGGGGACCT GTTGCTGATA
GAAACCGCCA ATCGCTTAAA GTCCTGTGTG CGGGATGCCG ATGTGGTGGC GCGGCTCGGC
GGCGATGAAT TTACCGTAGT GCTCAGCGCT ATGGCGGATC ATAAGGGTAT TGAGCGGGTA
GCTGAGCACA TTTTAAGGCG CATTTCCGAG CCCTATGTGC TGGGTGAGGA GACCGCCTAT
ATCAGCGCCA GTATCGGGAT AACTCTGTAT CCCGATGATG CAACCAGCAT TGAAGGTTTG
CTCAAACATG CGGATCAGGC CATGTATGCG GCTAAAGATC AGGGGCGTAA TCGTTTCAAC
TACTTCACGC CTTCGATGCA GGAATATGCA AAGTATCGGA TGCGCTTAAT CCAAGATTTA
CGCCAAGCCG TTGTTAACAA AGAGTTTGAG TTGCATTATC AACCTATAGT GACTATGGGG
ACTGGTGAGG TCCTTAAGGC CGAAGCGCTT TTACGTTGGT TCCACCCCGA ACGTGGGCAG
GTTTCTCCAG CTGAGTTTAT ACCCGTTGCC GAAGATACTG GGCTGATTGT CGAGATTGGC
AATTGGGTTT TCGAGCAGGC GGCGCGCCAG AGCGCACAAT GGCGTAAAAC CCTTGGGGTC
GAGATCCAGA TCAGCGTTAA CAAGTCGCCT ATTCAGTTTC GCGATGAGGG CACGCTGCTG
CACAATTGGC TGGAGTTACT GCAGGAATTG GATGTGACAG GCACAGGCGT GTGCGTCGAA
ATTACCGAAG GACTCTTACT CGATGCCAGT ATGGGCGTGA CCGAAAAGCT TCTTGCCTAT
CGGGATGCGG GCGTACAAGT TTCTCTAGAC GACTTTGGCA CTGGCTATTC ATCACTGGCG
TATTTGAAAA AATTCGATAT CGACTATTTG AAAATCGATC AATCTTTTAC CCGTCATATC
GACACGGATG AAAGCGACCA AACCCTGTGT GAGGCGATTA TCGTTATGGC CCATAAGTTA
GGAATGAAAG TGATTGCCGA AGGGGTTGAA ACCGAGGCGC AGCGCCAAGT GTTGCTTAAT
GCGGGCTGTG ACTATGGCCA AGGCTATTTA TTCTCTAAAC CTGTGAGTGC GGCTGAGTTT
ACAAGCCAGT ATTTGCTCAA AGAGGCTTAG
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| Protein sequence | MDKSIFLPLV QNAALLLALV FLYDAIPKKH QRQYFLLWRL GIGLLIGGIG VTIMSTPWMY
EPGIIFDTRS VLLCVTGLFF GGLPTVVAVI ITGAYRYSIG GAAMWVGLAV IISSGLIGVI
WRQYRKSYLA NISGREIFSF AFVVHIVMLL WFFLLPSHVA IPVLQKIMLP VLTIYPLATW
LLSRLLSRRF ELERDEQIRL QDDFLFRSQF NVGNIGIAIT GVDQKWIKVN PRLCQMLKYS
EDELLHMTWK QLTHPDDIEA DIVKFELMLA GKIDNYEMDK RFIAKDSAIV YTHMTVACKR
ANHQVLLVIA GYLDVTAQTL ADREVLASRE QLELVLSSSD LGVWDWDIRN DHIERNARSA
DILGCDIDML NANSRQWMDS IVPEDRPKVL HSIEAHIRGE TPQHKMEYRL KTLNRDIRWI
LDTGKVVSRD TNNNALRMCG TYTDITEAKL IEESLKLSAL VYDNSSEAMS VLDETGVIIT
VNAAFTEITG YSESEIRGQH IRMLYCDLNG HGFYTEMNNE IREKGEWQGE MRQRRKNNEE
YVIWLTINTI NDKDGQPYRR VALFSDITDK KQSEHLIWKQ ANYDTLTGLP NRRMLLEYLG
AEIRSADRNR NHFALMFLDL DYFKEVNDTL GHAMGDLLLI ETANRLKSCV RDADVVARLG
GDEFTVVLSA MADHKGIERV AEHILRRISE PYVLGEETAY ISASIGITLY PDDATSIEGL
LKHADQAMYA AKDQGRNRFN YFTPSMQEYA KYRMRLIQDL RQAVVNKEFE LHYQPIVTMG
TGEVLKAEAL LRWFHPERGQ VSPAEFIPVA EDTGLIVEIG NWVFEQAARQ SAQWRKTLGV
EIQISVNKSP IQFRDEGTLL HNWLELLQEL DVTGTGVCVE ITEGLLLDAS MGVTEKLLAY
RDAGVQVSLD DFGTGYSSLA YLKKFDIDYL KIDQSFTRHI DTDESDQTLC EAIIVMAHKL
GMKVIAEGVE TEAQRQVLLN AGCDYGQGYL FSKPVSAAEF TSQYLLKEA
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