| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2748 |
|---|
| Symbol | |
|---|
| ID | 4253319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3281991 |
|---|
| End bp | 3283535 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638119383 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_734876 |
|---|
| Protein GI | 113971083 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3104] Dipeptide/tripeptide permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCACA GCAGTCCAAA TGCAGAGAAT GATCTGCGCG AAGTCAAGCA GTTAGGCATG
TGGGCCTCGA TCACTAGCCT AAGTTATATT TTTTGGTTAG TGGGCGGTAT GGAGCTGGTC
GAGCGTATCG CCTATTACGG TGTCAAAGCC AGTGCGGGCT TATACGCCAA AGCCCCCGAG
TCGGCGGGCG GTCTGGGGAT CAGCCTCAGC GACTATGGCA TCATTATCTC GCTCTGGGCC
ATTATGCAGA CCTTTGTGCC CGTGTTTACC GGCGGGATTT CAGATAGGGT CGGCTACAAG
GAAACAATTT TCGGCTCTAC CGTGATTAAA ATCATGGGCT ACCTCACCAT GGCGTTTTTC
CCCACCTTTT GGGGCTTCTT ATCGGGGGCA CTGTTACTCG CCATCGGCAC TGGGATATTT
AAACCCGGTA TTCAAGGCAC CTTAGTGCTC TCCACCAATC GCAATAACAC TTCCATGGCT
TGGGGGATAT TTTACCAAGT CGTGAATATC GGTGGCTTCT TAGGGCCATT GGTTGCCGTG
CATATGCGCC AGCTTTCTTG GGATAATGTG TTTTATGCCT GCGCCGCGAT TATCTCGCTA
AACTTCTTGT TCTTATTGAC GTATACCGAG CCGGGTAAGG CCGAGCGCGT TGCACGCAAT
CAGCAAATTA AATCCGGCGA AATTAAGCAA GAAGCGCTTT GGCGCGACGC TTGGCATGAG
CTTAAAAAAC CTATCGTGAT TTATTACATG CTAGTGTTTT CAGGCTTTTG GTTCCTCTTT
AACGCCCTGT TTGACGTACT GCCGATCCAC ATCTCCGAGT GGGTCGATAC CAGCGTGATC
GTCACCAGTC TGTTTGGTAG CGAAGGCACC AGCAACGGCA TTTTACAGTT CTGGCTCGGG
TTAAATAACG AAGGCACTAA GGTGATGCCA GAAGGCATGC TGAACCTCAA CGCCGGCCTG
ATTATGACCA GCTGCTTTTT AATTGCCGCG CTGACCGCCA AATACCGCAT CACCACGGCG
ATGCTGATTG GCTGTTTACT CAGTATCTTG GCCTTTGTGT TTATCGGCGC CTTCCATGCC
GCTTGGTTTA TCGTGTTCGC CATTGCCATG TTCTCCATCG GCGAGATGAT GATCAGCCCT
AAGAAAAACG AGTTTATGGG TAACATTGCC CCCGAAGGTA AAAAAGCCAT GTACCTTGGT
TTTGTGATGC TGCCGCAAGG GATTGGTTGG GGCTTAGAAG GCTATTTTGG CCCTAAACTC
TATGAGATTT TTGCCTCTAA AGAGTTGTTT TCACGCGAGT TATTACTCGA GCGTGGCATG
AGCTCAGCGG ATGTGAATGC CATTCCACAA GGGGAAGCCT TTACCACCTT GGTGAGCTAT
ACCGGCGAAA ACGCCCATGA TCTGACTCAG CTGCTCTATC ACAGCCATAA TATCGGTATG
GCTTGGTATA TTATCGCCGC GATCGGCACC ATTTCGGCTG TAGGGATTTA TATCTATGGT
AAGTGGTTAC TGTCGCTGCA AAGGGCGCAG CAAGCCGCGC ACTAA
|
|---|
| Protein sequence | MSHSSPNAEN DLREVKQLGM WASITSLSYI FWLVGGMELV ERIAYYGVKA SAGLYAKAPE
SAGGLGISLS DYGIIISLWA IMQTFVPVFT GGISDRVGYK ETIFGSTVIK IMGYLTMAFF
PTFWGFLSGA LLLAIGTGIF KPGIQGTLVL STNRNNTSMA WGIFYQVVNI GGFLGPLVAV
HMRQLSWDNV FYACAAIISL NFLFLLTYTE PGKAERVARN QQIKSGEIKQ EALWRDAWHE
LKKPIVIYYM LVFSGFWFLF NALFDVLPIH ISEWVDTSVI VTSLFGSEGT SNGILQFWLG
LNNEGTKVMP EGMLNLNAGL IMTSCFLIAA LTAKYRITTA MLIGCLLSIL AFVFIGAFHA
AWFIVFAIAM FSIGEMMISP KKNEFMGNIA PEGKKAMYLG FVMLPQGIGW GLEGYFGPKL
YEIFASKELF SRELLLERGM SSADVNAIPQ GEAFTTLVSY TGENAHDLTQ LLYHSHNIGM
AWYIIAAIGT ISAVGIYIYG KWLLSLQRAQ QAAH
|
|---|
| |