Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2747 |
Symbol | |
ID | 4253318 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3280220 |
End bp | 3281572 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638119382 |
Product | multi anti extrusion protein MatE |
Protein accession | YP_734875 |
Protein GI | 113971082 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACTGCTA TTTCCGCTGC CGCAACGGAC CAACGCCTGC TGCAAGAGCC GATTTCAAAG CTTTTTTGGC GCTACACTAT TCCAACGATC GCCTCCATGC TGGTGACTGG GGTGTATGTC ACCATTGATG GTATCTTCGT TGGCCATTAC CTCGGCGAAA CTGGATTGGC GGGCATGATG TTGGCCTATC CCGTGGGCGC GATTCTCTAT GCTGTCGGCG CCATGATAGG CATGGGCAGC GCGGCGTTAG TCTCGATTAA CTTAGGGCAA GGTAATGTCA CCAAGGCGCG TAAGTTGCTC GGCAATGCCT TTAGCTTGTG TTTACTGGCG GGGGCATTTT TTGCCTTAGT CGGCGGGATC TTTTCTCGGG ATATTTTAAT TGCCCTCGGC GCCGAGGGGG AGATACTCGA AAACGCTAAC GAATACCTGT TCTGGTATTT TGCCTTATGT CATTTCCCTA TTATTTCAAT GGCATTTACC ACCTTGCTGC GTAACGATGG TCGCCCATCT ATGGTGACCT TTGTGCTGAT CTTAGGTGGC GTGCTGAACA CCTTTTTAGA TTGGCTGTTT ATTGTGGTGT TTCCCTTCGG CTTGGCCGGG GCGGCGATTG CCACCATGTT GTCGCAGGCC GTGACTGGGC TGCTCTGTTT GCAGCATTTC TTTGGGGCGC GCACTCAGCT CAAAATCAAT CTTGAGCAGA TGAAGCTAAA GCTCGACAAC TGCCTCAATA TTGCCCGTGT TGGCCTGCCA AGCTTTTTGA TGAACCTGTA TTTGTCGATC GTATTGACCC TGCATAACAC CGCATTTTTA TGGGTCGGTG GCCCTCTGCA TGTGGCGGCA TACGGGGTTG TGAGTTACAC CGAAGCGTTT TTCTATCTGA TTTTTGAAGG CATTGCCCTC GGTACTCAAC CGATTTACAG CTTTAATGCT GGGGCAGGGC GCTTCGACAG GGTTAAACAG GCACGCAATA TCGCCTTTGG CATGACACTA CTCACCGCTG CACTTGGCTT AGTGTTGATT TATTCCCGCC CCGAATGGTT GGTGTACCTG TTTGCCGGTG ACAACCCAAG CTTAACGCCG GTCGCGATTG AAGGAATGCG TTGGTATTTC TGGGGCTTAC CTATGGAAGG CTTGATTCTT GTGGGCGCCA GTTTCTTCCA GGCGATTAAC TGTGCTAAGC AGGCATCGAT ACTCACTGGG GCGAAATTGC TGCTTATCGC CGCCATTATC TATTGTTTTG CCTGGGCCTT TGGCGTGATT GGCGTGTGGG TGTCGCTCGC GACCTGTAGC ACTATGCTGG TGATTTGGAT GTTTATCGCG ATGGGGCGGC TCCAAGTGAA CGCTAAAGTC TGA
|
Protein sequence | MTAISAAATD QRLLQEPISK LFWRYTIPTI ASMLVTGVYV TIDGIFVGHY LGETGLAGMM LAYPVGAILY AVGAMIGMGS AALVSINLGQ GNVTKARKLL GNAFSLCLLA GAFFALVGGI FSRDILIALG AEGEILENAN EYLFWYFALC HFPIISMAFT TLLRNDGRPS MVTFVLILGG VLNTFLDWLF IVVFPFGLAG AAIATMLSQA VTGLLCLQHF FGARTQLKIN LEQMKLKLDN CLNIARVGLP SFLMNLYLSI VLTLHNTAFL WVGGPLHVAA YGVVSYTEAF FYLIFEGIAL GTQPIYSFNA GAGRFDRVKQ ARNIAFGMTL LTAALGLVLI YSRPEWLVYL FAGDNPSLTP VAIEGMRWYF WGLPMEGLIL VGASFFQAIN CAKQASILTG AKLLLIAAII YCFAWAFGVI GVWVSLATCS TMLVIWMFIA MGRLQVNAKV
|
| |