| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2735 |
|---|
| Symbol | |
|---|
| ID | 4253306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3265098 |
|---|
| End bp | 3267902 |
|---|
| Gene Length | 2805 bp |
|---|
| Protein Length | 934 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638119370 |
|---|
| Product | FAD linked oxidase domain-containing protein |
|---|
| Protein accession | YP_734863 |
|---|
| Protein GI | 113971070 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0247] Fe-S oxidoreductase
[COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTATTA ATTATGACGC TGTTTATAAA GAGCTTATTC AACAACTCGG CGAATCTGCC
GTCTCAAATG ACCCTGTGCG CCGCTTTGCC TGGTCAACGG ATGCCAGTTA TTTCCGTATC
GTACCTGAAA TCGTGGTCCA CGCAGATAGC CTCGAACAAG CGAAACAGAC CTTAGCCATC
GCCCGTGCCC ATAAAGTGCC AGTGACATTC CGTGCGGCGG GGACCAGTTT ATCTGGCCAA
GCCATTGGCG AAGGGATTTT ATTGATCTTG GGCCACGACG GTTTTAGAAC CATAGAAATC
AGTTCCGACA GCAATAAGAT CACCTTAGGC GCGGCGGTGA TTGGTGCCGA TGCCAACGCG
GCGCTCAAGC CTCTCAATAA GAAAATCGGT CCCGATCCGG CGACCCTTGC CTCAGCCATG
GTCGGCGGTA TTGTGTCTAA CAACGCCTCG GGCATGTGCT GTGGTACGGC GCAAAACAGT
TACCAGACCA TCGCCTCGGC TAAGCTGCTA TTTGCCGATG GTACCGAGCT CAACACAGGT
TGCGATAAGT CTAAGGCCGC CTTTACCCAA AGCCACGGCG AGTTACTCGA CTCACTGGCC
TCACTGGCTA AATTAACCCG CAGCAATGAG GTGCTCGCGC AGCGTATTCG CAAAAAATAC
TCCATCAAAA ACACCACGGG CTATAGCATT AATGCCCTAG TGGATTTTGA AGATCCGTTC
GATCTGATTA ACCATCTCAT CGTCGGCGCC GAAGGTACCT TAGCCTTCGT CGAAGAAGTC
ACTTACCACA CGGTCGATGA AGCCAAATTT AAAGCCTCGG CGATGGCGGT ATTTTTCAAC
ATGGTGGATG CGGCGAGTGC CATTCCACCG ATTATTGGCG ATAGCGTTGC CGCCGCCGAA
TTACTCGACT GGGCATCCAT CAAGGCCGTC ACCGGTAAAA AAGGCATGCC AGACTGGCTC
AATGAGCTGC CAGAAGGCGC GGCCATCCTG TTGATTGAGT CCCGCGCTAA CGATGCCCAA
ACCTTAGAAA GCTATACCCA AGATGTGATT GCCAAACTCG CGCACATCAA AACAGAGCGT
CCGATTAGCT TCAGTAGCGA TGCCAACGTG TACAGCAAAT ACTGGGCAAT GCGCTCTGGC
CTGTTCCCCA TTATCGGTGG CGAGCGACCA AAGGGCAGCT CAGTCATCAT CGAAGACGTG
GCCTTTAACG TCGAACATTT AGCCGCGGCC GCCGCCGATT TAACCGAGCT ATTCCATAAG
CACGGCTATC CCGAAGGTGT AATATACGGC CATGCGCTGG CGGGTAACTT CCACTTTATT
ATCACCCCGA CCTTCGCCTC CCAAGCCGAC ATCGAGCGCT TCCAAGGCTT TATGCAGGAT
GTGGCCGAGA TGGTGATCCA TAAATACGAT GGTTCGATGA AGGCCGAGCA TGGTACTGGC
CGCGCCGTTG CGCCTTTCGT TGAAATGGAA TGGGGCGCCG ATGCTTACAC CCTCATGAAA
CGCATCAAGC ATATCTTCGA CCCAGAAGGC CTGCTCAACC CCGGCGTTAT CTTAAACGAC
GACAGCACAG TGCACGTGAA AAACATCAAG CCTTGCCCTG TGGTCGATGA TTTTGTCGAT
AAGTGTATCG AGTGTGGTTT CTGCGAAAAG ACCTGCCCGA CTTCGGCGCT GAACTTCTCG
CCACGTCAGC GGATCGCCAC CCTGCGTGAA ATCGAGCGCT TAGAGCAATC TGGCGATAAA
GCCGCCGCCG ATAAAATGCG TGCCGATGCC AAGTATGATG TGATTGATAC CTGCGCGGCT
TGCCAGCTCT GTACTATCGC CTGCCCAGTC GATAACAGCA TGGGTCAGTT AGTTCGTAAA
CTACGCACGC CCTATATCAG CACCACTGAG CAAAAAGTGT TGGATTTCCA AGCCAAACAC
TTTGGCGCCG TCAACCAAGT GATCAGCACA GGCTTTGACG TGTTGGGAGT CATCCATAAG
ATCACCGGCG ATGGTATCAC CAACGCGCTG ATGAAAACTG GCCGTTTACT CTCCAAAGAA
GTGCCCTATT GGAATCCAGA CTTTCCTAAA GGTGGCAAAC TGCCTAAACC GTCCCCCGCA
AAAGCGGGCC AAGAAACCGT GGTTTACTTC CCTGCCTGCG GTGGTCGCAC CTTTGGGCCA
ACGCCAAAGG ATCCCGATAA TCGCACTTTG CCAGAGGTGG TTGTCACCCT GCTCGAGCGC
GCGGGCTATA ACGTTATTAC CCCAGAGAAG ACCCGCGATT TATGCTGCGG CCAGATGTGG
GAATCTAAGG GCGACTTTAA AAACGCCGAC GCCAAACGCC AAGAGCTTAT CGATGTGGTC
AGCAAGATGA GTCATGGCGG CAAAATCCCA GTATTAGTCG ATGCTCTGTC TTGTACCTAT
CGTACCCTCA CGGGTAACCC TCAGGTGCAA ATCACTGACT TGGTTGAGTT TATGCACGAC
AAGCTGCTGG ATAAGCTGAG CATCAACAAA AAGGTCAATG TAGCTCTGCA CTTAGGTTGT
AGCGCTCGTA AGATGAAGTT AGAGCCTAAG ATGCAAGCCA TTGCCGATGC TTGTTCGAGC
CAAGTGCTCA AACCTGCGGG CATTGACTGC TGCGGTTACG CCGGTGAAAA AGGCCTGTAT
AAGCCAGAAA TCAACGCCAG CGCCCTGCGT AATATCAAAA AGCTCATTCC AGTCGAGATT
AAGGAAGGCT ATTACGCCAA CCGTATGTGT GAAGTCGGCT TAACGCAGCA CAGTGGCATT
TCCTACCGCC ACTTAGCGTA TTTGCTCGAA GAGTGCAGCC GCTAA
|
|---|
| Protein sequence | MSINYDAVYK ELIQQLGESA VSNDPVRRFA WSTDASYFRI VPEIVVHADS LEQAKQTLAI
ARAHKVPVTF RAAGTSLSGQ AIGEGILLIL GHDGFRTIEI SSDSNKITLG AAVIGADANA
ALKPLNKKIG PDPATLASAM VGGIVSNNAS GMCCGTAQNS YQTIASAKLL FADGTELNTG
CDKSKAAFTQ SHGELLDSLA SLAKLTRSNE VLAQRIRKKY SIKNTTGYSI NALVDFEDPF
DLINHLIVGA EGTLAFVEEV TYHTVDEAKF KASAMAVFFN MVDAASAIPP IIGDSVAAAE
LLDWASIKAV TGKKGMPDWL NELPEGAAIL LIESRANDAQ TLESYTQDVI AKLAHIKTER
PISFSSDANV YSKYWAMRSG LFPIIGGERP KGSSVIIEDV AFNVEHLAAA AADLTELFHK
HGYPEGVIYG HALAGNFHFI ITPTFASQAD IERFQGFMQD VAEMVIHKYD GSMKAEHGTG
RAVAPFVEME WGADAYTLMK RIKHIFDPEG LLNPGVILND DSTVHVKNIK PCPVVDDFVD
KCIECGFCEK TCPTSALNFS PRQRIATLRE IERLEQSGDK AAADKMRADA KYDVIDTCAA
CQLCTIACPV DNSMGQLVRK LRTPYISTTE QKVLDFQAKH FGAVNQVIST GFDVLGVIHK
ITGDGITNAL MKTGRLLSKE VPYWNPDFPK GGKLPKPSPA KAGQETVVYF PACGGRTFGP
TPKDPDNRTL PEVVVTLLER AGYNVITPEK TRDLCCGQMW ESKGDFKNAD AKRQELIDVV
SKMSHGGKIP VLVDALSCTY RTLTGNPQVQ ITDLVEFMHD KLLDKLSINK KVNVALHLGC
SARKMKLEPK MQAIADACSS QVLKPAGIDC CGYAGEKGLY KPEINASALR NIKKLIPVEI
KEGYYANRMC EVGLTQHSGI SYRHLAYLLE ECSR
|
|---|
| |