| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2731 |
|---|
| Symbol | |
|---|
| ID | 4253302 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3259035 |
|---|
| End bp | 3260903 |
|---|
| Gene Length | 1869 bp |
|---|
| Protein Length | 622 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638119366 |
|---|
| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| Protein accession | YP_734859 |
|---|
| Protein GI | 113971066 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000470033 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.733812 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTGG ACATTTCACA GTTTCCCGTG TTGGCTCAGG CCAACACTCC TAATGAACTC
CGCCAGCTTC CTCAGGCCCT GTTACCTCAA TTGGCCGATG AGTTGCGGGA GTTTCTTCTT
AAGTCCGTTG GCATGTCCAG CGGACATTTT GCCTCTGGAC TCGGCACAGT CGAACTGACT
GTTGCCCTGC ATTATGTCTA TAACACCCCG TTTGATCGTT TGATTTGGGA CGTTGGCCAC
CAAGCCTATC CCCATAAAAT CCTCACCGGT CGCCGCGACA GAATGCACAC CATTAGGCAA
AAGAACGGTT TACACCCTTT CCCTTGGCGG GAAGAAAGTG AATACGACAC CTTTAGCGTC
GGACACTCCG GAACATCCAT CAGTGCCGCA TTAGCCATGG CCGTTGCCGC CGAAAAAGAA
CAGGCTGGAC GCAAAGTGGT CGCCGTCATT GGCGATGGCG CCATGACGGG CGGTATGGTG
TTCGAGGCCA TGAATCACGC GGGTGATTTG CACAACGATA TGCTGATGGT GCTGAACGAT
AACGAAATGT CGATTTCAGA AAACGTCGGC GCGCTCAACA ATCACTTAGC GCAGTTGATG
TCGGGCCGCC TCTACACCAC GATTCGTGAA AGCAGTAAGA AAGTGCTCAA GGGCATGCCG
GTCATCAAAG AGATGGCCAA GCGCACCGAA GAACACCTTA AAGGCATGGT TGTACCTGGC
ACTCTGTTTG AAGAGTTAGG CTTTAACTAT ATCGGCCCGA TCGATGGCCA CGATGTCGAT
GCCTTAGTGG AAACCCTGCG TAATATGCGC TCTCTAAAGG GACCACAAGT GCTACACATC
ATGACCAAAA AAGGTCGTGG TTATGAACCG GCCGAAAAAG ATCCTATCGG TTGGCACGCA
GTACCTAAAT TTGACCCGTC ACAGTTTAAG AAGCCAGCCA CTAAGCCGGG CCTGCCGACC
TTCTCCCAAG TGTTTGGCAA ATGGTTATGT GATATTGCCG AACAGGACGA AAAAGTCTTA
GGCATTACCC CTGCCATGCG TGAAGGTTCT GGCATGGTGG AGTTTTCGCA GCGCTTCCCG
AAACAATATT TCGATGCCGC CATTGCCGAG CAACATGCAG TGACCCTAGG GGCCGGATTT
GCCTGTGAAG GCTTTAAGCC CGTGGTCGCC ATTTACTCGA CCTTCCTGCA ACGGGGTTAT
GATCAACTGA TCCACGATGT GGCACTGCAG CGCTTGCCTG TATTGTTCGC CATTGACCGT
GGCGGTATCG TCGGTGCCGA CGGCCCAACT CACCAAGGGG CATTCGATTT AAGCTTTATG
CGCTGCATCC CGAATATGGT GATCATGGCG CCATCGGATG AAAATGAATG TCGCCAAATG
CTCTATACCG GTTATTGCTA TGATGCAGGT CCGAGCGCGG TGCGTTATCC AAGGGGCAGC
GCCACTGGCG CGACTCAGGT AGAAGCCATG ACGGCGCTGC CAATCGGTAA AGGCGTGATT
AAGCGTTTAG GTAAACGTAT CGCCATGCTG AACTTTGGTA CCACCTTAGC CGCCGCCTTA
ACCGCCGCAG AAAGCTTAGA CGCCACCGTC GTCGATATGC GCTTTGTGAA GCCATTAGAT
GTGGATTTGG TTAAAGAGAT GGCGCAAACC CACGATGTGC TCGTGACAGT GGAAGAAAAC
GCCATTATGG GCGGCGCGGG CTCTGGTGTA TTAGAACTGC TGCAAAAGCT TAAAATGCCC
AAACCTGTGC TGCAAATCGG CCTACCCGAT GAGTTTATTA AACATGGCTC TCCAGAAGAA
GTGACCCATG ATTTGCAACT CGATGCCGAA GGTATGTTAG CGCAAATTAA TGCCTTTCTT
GCCGATTGA
|
|---|
| Protein sequence | MSLDISQFPV LAQANTPNEL RQLPQALLPQ LADELREFLL KSVGMSSGHF ASGLGTVELT
VALHYVYNTP FDRLIWDVGH QAYPHKILTG RRDRMHTIRQ KNGLHPFPWR EESEYDTFSV
GHSGTSISAA LAMAVAAEKE QAGRKVVAVI GDGAMTGGMV FEAMNHAGDL HNDMLMVLND
NEMSISENVG ALNNHLAQLM SGRLYTTIRE SSKKVLKGMP VIKEMAKRTE EHLKGMVVPG
TLFEELGFNY IGPIDGHDVD ALVETLRNMR SLKGPQVLHI MTKKGRGYEP AEKDPIGWHA
VPKFDPSQFK KPATKPGLPT FSQVFGKWLC DIAEQDEKVL GITPAMREGS GMVEFSQRFP
KQYFDAAIAE QHAVTLGAGF ACEGFKPVVA IYSTFLQRGY DQLIHDVALQ RLPVLFAIDR
GGIVGADGPT HQGAFDLSFM RCIPNMVIMA PSDENECRQM LYTGYCYDAG PSAVRYPRGS
ATGATQVEAM TALPIGKGVI KRLGKRIAML NFGTTLAAAL TAAESLDATV VDMRFVKPLD
VDLVKEMAQT HDVLVTVEEN AIMGGAGSGV LELLQKLKMP KPVLQIGLPD EFIKHGSPEE
VTHDLQLDAE GMLAQINAFL AD
|
|---|
| |