Gene Shewmr4_2730 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2730 
Symbol 
ID4253301 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3258132 
End bp3259013 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content50% 
IMG OID638119365 
Productfarnesyl-diphosphate synthase 
Protein accessionYP_734858 
Protein GI113971065 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0142] Geranylgeranyl pyrophosphate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00244683 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.486115 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTAGTCA ATGCAATAAA AGAATATCAA CTACGGGTTG ATGACCAATT AAAACAACGT 
TTCAGCACAC TCGAAGACAC TGCGCCACAA TTAAAGGCCG CCATGAGCCA CGGCGCACTG
TTAGGTGGCA AGCGTATTCG TCCCTTTTTG GTTTACAGTG TGGGGCAAAT GTTTGGCGTG
CCGCTCGAAA AGCTCGATGC CTGCGCCGCC GCCATTGAAT GTATTCATGC TTATTCGTTA
ATCCATGACG ATTTACCCGC CATGGACGAT GACGACCTTC GTCGTGGTCA GCCCACAGTG
CATATCGCCT TCGATGAGGC GACCGCCATC CTTGCTGGGG ATGCTCTGCA AACCTTAGCC
TTTGAAATTG TTACCGAAGC AGTAACTGGG ATCAGCAGCG AGCAACATAT CGCTATGGTG
AGAGCGCTGG CCAAAGCCTC GGGTTACCGT GGTATGTGTG GCGGCCAAGC GATTGACTTA
GCCTCAACCG ATAAGCTCAT TGACCTTAAG GCCCTAACTC AACTCCACAA TATGAAAACG
GGCGCCCTTA TCAGCTGCGC CGTTGAGTTA GCCTTGATTG CCGCTAATGC GCCAAAAGAT
GAATATCAGA CTATGATAGA ATTTGCCCAT GCGGTAGGAC TTGCCTTCCA AGTGCAAGAC
GATATTCTGG ACATCATTGC CACCACGGAA GAACTCGGCA AACCCCAAGG CTCAGACGCC
GAGTCCAATA AGAGTACTTT TCCGCAACTA CTTGGACTGC AAGGCGCCAA AGATACCGCC
GCGCAACTGA TCCAAGAGGC ACTATCAGCG CTGGCTAAAT TGCCATACAA TAGCCAGTTA
ATCGCAGACT TCGCCCGCTA TATCATTGAG CGAAGAATAT AA
 
Protein sequence
MLVNAIKEYQ LRVDDQLKQR FSTLEDTAPQ LKAAMSHGAL LGGKRIRPFL VYSVGQMFGV 
PLEKLDACAA AIECIHAYSL IHDDLPAMDD DDLRRGQPTV HIAFDEATAI LAGDALQTLA
FEIVTEAVTG ISSEQHIAMV RALAKASGYR GMCGGQAIDL ASTDKLIDLK ALTQLHNMKT
GALISCAVEL ALIAANAPKD EYQTMIEFAH AVGLAFQVQD DILDIIATTE ELGKPQGSDA
ESNKSTFPQL LGLQGAKDTA AQLIQEALSA LAKLPYNSQL IADFARYIIE RRI