Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2730 |
Symbol | |
ID | 4253301 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3258132 |
End bp | 3259013 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638119365 |
Product | farnesyl-diphosphate synthase |
Protein accession | YP_734858 |
Protein GI | 113971065 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00244683 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.486115 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTAGTCA ATGCAATAAA AGAATATCAA CTACGGGTTG ATGACCAATT AAAACAACGT TTCAGCACAC TCGAAGACAC TGCGCCACAA TTAAAGGCCG CCATGAGCCA CGGCGCACTG TTAGGTGGCA AGCGTATTCG TCCCTTTTTG GTTTACAGTG TGGGGCAAAT GTTTGGCGTG CCGCTCGAAA AGCTCGATGC CTGCGCCGCC GCCATTGAAT GTATTCATGC TTATTCGTTA ATCCATGACG ATTTACCCGC CATGGACGAT GACGACCTTC GTCGTGGTCA GCCCACAGTG CATATCGCCT TCGATGAGGC GACCGCCATC CTTGCTGGGG ATGCTCTGCA AACCTTAGCC TTTGAAATTG TTACCGAAGC AGTAACTGGG ATCAGCAGCG AGCAACATAT CGCTATGGTG AGAGCGCTGG CCAAAGCCTC GGGTTACCGT GGTATGTGTG GCGGCCAAGC GATTGACTTA GCCTCAACCG ATAAGCTCAT TGACCTTAAG GCCCTAACTC AACTCCACAA TATGAAAACG GGCGCCCTTA TCAGCTGCGC CGTTGAGTTA GCCTTGATTG CCGCTAATGC GCCAAAAGAT GAATATCAGA CTATGATAGA ATTTGCCCAT GCGGTAGGAC TTGCCTTCCA AGTGCAAGAC GATATTCTGG ACATCATTGC CACCACGGAA GAACTCGGCA AACCCCAAGG CTCAGACGCC GAGTCCAATA AGAGTACTTT TCCGCAACTA CTTGGACTGC AAGGCGCCAA AGATACCGCC GCGCAACTGA TCCAAGAGGC ACTATCAGCG CTGGCTAAAT TGCCATACAA TAGCCAGTTA ATCGCAGACT TCGCCCGCTA TATCATTGAG CGAAGAATAT AA
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Protein sequence | MLVNAIKEYQ LRVDDQLKQR FSTLEDTAPQ LKAAMSHGAL LGGKRIRPFL VYSVGQMFGV PLEKLDACAA AIECIHAYSL IHDDLPAMDD DDLRRGQPTV HIAFDEATAI LAGDALQTLA FEIVTEAVTG ISSEQHIAMV RALAKASGYR GMCGGQAIDL ASTDKLIDLK ALTQLHNMKT GALISCAVEL ALIAANAPKD EYQTMIEFAH AVGLAFQVQD DILDIIATTE ELGKPQGSDA ESNKSTFPQL LGLQGAKDTA AQLIQEALSA LAKLPYNSQL IADFARYIIE RRI
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