| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2724 |
|---|
| Symbol | |
|---|
| ID | 4253295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 3252739 |
|---|
| End bp | 3253650 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638119359 |
|---|
| Product | DNA-binding transcriptional activator GcvA |
|---|
| Protein accession | YP_734852 |
|---|
| Protein GI | 113971059 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000916948 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0913399 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAGAC GCTTACCACC ACTGAATGCG GTTAAAGCAT TTGAGGCCGC CGCACGGCAT
TTGAGCTTTA CTCGAGCGGC TGAAGAATTG TTTGTGACTC AGGCTGCGGT GAGTCACCAA
ATTAAGGCGC TGGAAGATTT TCTCGGATTA AAATTATTTC GCCGAAAGAA TCGTTCGCTG
CTGCTGACCG AAGAAGGTCA GAGCTATTTT CTCGATATTA AAGATATCTT CACTCAACTG
GCGGATGCGA CCGACAGGCT GCTCGCACGT AGCGCCATTG GTTCGTTGAC CGTGAGTATG
TCGCCCAGTT TTGCGATTCA GTGGCTGGTG CCGCGCCTGT CGAAGTTTAG TGAAAAAAAT
CCCGACATTG ACGTACGAAT TAAAGCGGTT GACACAGAGG CCAGCTCCTT AACCGACGAT
GTCGACGTCG CCATTTATTA TGGTTTAGGC AATTGGCCGG GACTGCGCGC CGATAAACTC
CGCAATGAAG TGCTGATCCC TGTATGTTCG CCCATGCTGT TAAACGGCCC TAAGCCGTTA
TCAAAGCCGG AAGATTTAAA ATACCACACC CTGCTGCACG ATATGAGCCG CCACGATTGG
CAGGCTTGGT TTAGACAATG TGGCATTCAC GATATCAACG TCAACCAAGG GCCGATTTTC
AGTCATTCCT CCCTCGTTTT GCAGGCGGCG GCCCACGGCC AAGGTGTGGC CTTGGGTTAT
AGCGTACTCG CTCGCCCCGA TATTAAGGCG GGGCGACTGG TGTGCCCATT CCAAGAAGTG
TTAGTGAGTA AAGATGCTTA TTACCTCGTC TGCCAACAGA ATCATGCCGA GCTCGGTAAA
GTGGTCGCGT TTCGTGAGTG GATGTTAGAT ATGTTTGCCG AGGAGTCACG CAGTGAGTTG
TTGCCCGGAT AA
|
|---|
| Protein sequence | MSRRLPPLNA VKAFEAAARH LSFTRAAEEL FVTQAAVSHQ IKALEDFLGL KLFRRKNRSL
LLTEEGQSYF LDIKDIFTQL ADATDRLLAR SAIGSLTVSM SPSFAIQWLV PRLSKFSEKN
PDIDVRIKAV DTEASSLTDD VDVAIYYGLG NWPGLRADKL RNEVLIPVCS PMLLNGPKPL
SKPEDLKYHT LLHDMSRHDW QAWFRQCGIH DINVNQGPIF SHSSLVLQAA AHGQGVALGY
SVLARPDIKA GRLVCPFQEV LVSKDAYYLV CQQNHAELGK VVAFREWMLD MFAEESRSEL
LPG
|
|---|
| |