Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2720 |
Symbol | |
ID | 4253291 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3249223 |
End bp | 3250233 |
Gene Length | 1011 bp |
Protein Length | 336 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638119355 |
Product | isocitrate dehydrogenase |
Protein accession | YP_734848 |
Protein GI | 113971055 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
TIGRFAM ID | [TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type [TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type [TIGR02088] isopropylmalate/isohomocitrate dehydrogenases |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000273137 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0347586 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAAAAA GAACGATAAC CGTAATTCCA GGTGATGGAA TTGGCCCAAG TATTATTGAT TCAGCCTTAA AAATTCTTGA TAAAGCAGGT TGTGATTTTG AATATGAATT TGCCGATGCC GGCTTAACTG CTCTCGAGAA GCAGGGTGAA CTACTTCCGC AGCGTACTTT AGAACTGATC GAAAAAAACC GCATCACCCT GAAAGGCCCG CTGACGACAC CAGTAGGCGA AGGCTTCACC TCTATCAACG TGACATTACG TAAGAAATTC GGCCTGTACG CTAACGTGCG TCCAGTGTTG TCTTTCAAAG GCACTCAAGC CCGTTATGAA AACATTGATA TCATCACAGT GCGTGAAAAC ACCGAAGGCA TGTACTCAGG CCACGGTCAA AAAGTGTCTG AAGACGGCAC CACAGCTGAA GCGACCAGTA TCGTCACTCG CCAAGGCGCT GAGCAGATCG CGACATTCGC CTACGAACTG GCCCGCAAAG AAAACCGTAA GAAAGTCACT ATCGTGCATA AAGCAAACAT CATGAAGTCA ACTTCAGGCC TGTTCCTGAA AGTGGCCCGT GAAGTGAGCC AACGCTACCC AGACATCAAA ACCGAAGAAA TGATCGTCGA TGCGACTTGC ATGAAGCTAG TGATGAACCC AGAAAACTTC GACGTTATCG TGACCACCAA CCTGTTTGGT GACATTCTGT CGGATCTGTG TGCTGGTTTA GTTGGCGGTT TAGGTATGGC ACCCGGCGCC AACATTGGCC GTGATGCAGC GATTTTCGAA GCGGTTCATG GCAGCGCGCC AGATATCGCT GGTAAAAACC TCGCAAACCC AACCTCTGTG ATCTTAGCCT CTATCCAAAT GCTGGAATAC TTAGGCATGG CTGATAAAGC CGACATGATC CGTAAAGCCG TATCGGCAGT GATTGAAGAA GGCGACCGTA CGACTCGCGA TTTAGGCGGC ACCCACGGCA CGACTGACTT CACTCAAGCG GTGCTTGACC GTCTGTCATA A
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Protein sequence | MSKRTITVIP GDGIGPSIID SALKILDKAG CDFEYEFADA GLTALEKQGE LLPQRTLELI EKNRITLKGP LTTPVGEGFT SINVTLRKKF GLYANVRPVL SFKGTQARYE NIDIITVREN TEGMYSGHGQ KVSEDGTTAE ATSIVTRQGA EQIATFAYEL ARKENRKKVT IVHKANIMKS TSGLFLKVAR EVSQRYPDIK TEEMIVDATC MKLVMNPENF DVIVTTNLFG DILSDLCAGL VGGLGMAPGA NIGRDAAIFE AVHGSAPDIA GKNLANPTSV ILASIQMLEY LGMADKADMI RKAVSAVIEE GDRTTRDLGG THGTTDFTQA VLDRLS
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