Gene Shewmr4_2720 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2720 
Symbol 
ID4253291 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3249223 
End bp3250233 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content49% 
IMG OID638119355 
Productisocitrate dehydrogenase 
Protein accessionYP_734848 
Protein GI113971055 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0473] Isocitrate/isopropylmalate dehydrogenase 
TIGRFAM ID[TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type
[TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000273137 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0347586 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAAAAA GAACGATAAC CGTAATTCCA GGTGATGGAA TTGGCCCAAG TATTATTGAT 
TCAGCCTTAA AAATTCTTGA TAAAGCAGGT TGTGATTTTG AATATGAATT TGCCGATGCC
GGCTTAACTG CTCTCGAGAA GCAGGGTGAA CTACTTCCGC AGCGTACTTT AGAACTGATC
GAAAAAAACC GCATCACCCT GAAAGGCCCG CTGACGACAC CAGTAGGCGA AGGCTTCACC
TCTATCAACG TGACATTACG TAAGAAATTC GGCCTGTACG CTAACGTGCG TCCAGTGTTG
TCTTTCAAAG GCACTCAAGC CCGTTATGAA AACATTGATA TCATCACAGT GCGTGAAAAC
ACCGAAGGCA TGTACTCAGG CCACGGTCAA AAAGTGTCTG AAGACGGCAC CACAGCTGAA
GCGACCAGTA TCGTCACTCG CCAAGGCGCT GAGCAGATCG CGACATTCGC CTACGAACTG
GCCCGCAAAG AAAACCGTAA GAAAGTCACT ATCGTGCATA AAGCAAACAT CATGAAGTCA
ACTTCAGGCC TGTTCCTGAA AGTGGCCCGT GAAGTGAGCC AACGCTACCC AGACATCAAA
ACCGAAGAAA TGATCGTCGA TGCGACTTGC ATGAAGCTAG TGATGAACCC AGAAAACTTC
GACGTTATCG TGACCACCAA CCTGTTTGGT GACATTCTGT CGGATCTGTG TGCTGGTTTA
GTTGGCGGTT TAGGTATGGC ACCCGGCGCC AACATTGGCC GTGATGCAGC GATTTTCGAA
GCGGTTCATG GCAGCGCGCC AGATATCGCT GGTAAAAACC TCGCAAACCC AACCTCTGTG
ATCTTAGCCT CTATCCAAAT GCTGGAATAC TTAGGCATGG CTGATAAAGC CGACATGATC
CGTAAAGCCG TATCGGCAGT GATTGAAGAA GGCGACCGTA CGACTCGCGA TTTAGGCGGC
ACCCACGGCA CGACTGACTT CACTCAAGCG GTGCTTGACC GTCTGTCATA A
 
Protein sequence
MSKRTITVIP GDGIGPSIID SALKILDKAG CDFEYEFADA GLTALEKQGE LLPQRTLELI 
EKNRITLKGP LTTPVGEGFT SINVTLRKKF GLYANVRPVL SFKGTQARYE NIDIITVREN
TEGMYSGHGQ KVSEDGTTAE ATSIVTRQGA EQIATFAYEL ARKENRKKVT IVHKANIMKS
TSGLFLKVAR EVSQRYPDIK TEEMIVDATC MKLVMNPENF DVIVTTNLFG DILSDLCAGL
VGGLGMAPGA NIGRDAAIFE AVHGSAPDIA GKNLANPTSV ILASIQMLEY LGMADKADMI
RKAVSAVIEE GDRTTRDLGG THGTTDFTQA VLDRLS