Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2716 |
Symbol | xni |
ID | 4253287 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3241748 |
End bp | 3242530 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638119351 |
Product | exonuclease IX |
Protein accession | YP_734844 |
Protein GI | 113971051 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.772252 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0192591 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATAAGT TTTTAATTAT CGATGGTCTC AACTTAGTTC GCCGCATTTA TGCGGCGATC CCAGATGAGA ACGATATGGA CAGTTTAACG GACCGCGTGA GCGTTGCCTG TACTAAACTG CTGCGCATTC ACCACCCTAC CCATGTCGCC ATTGTCTGGG ATGGTGATGA GATCTCTTGG CGTAAACAGC TTTACCCTGA CTATAAAAAG GGCAGAAAAC CTATGCCTGA GCCACTGGCC GCGGGCTTGT CAGCACTACA GGAACACCTT AAGAGCTTAC CAATCCAATC GATTTATGCC GCCGCCGAGG CCGATGATGT TATTGCCACC CTTGCGATGA AAACCGCCAA GGCTCAAGGT GAAGCCGTTA TCGTGTCGAC GGACAAGGGC TTTAGTCAGC TCAATCATCC GCGGATCAGC CAGTGGGACC ACTTTAATCA GCAATATTTA AATATCGCAG AACTAGAGCA AAAACTGGGG GTTGATCGCA ACCAATTTCT TGATTTAATG GCACTTGCTG GAGATAGCGG CAATAAAATC CCCGGTATTG CAGGCATTGG CCCCAAATCG GCCGCCGAAT TACTCAGAAC CTTCAGAACC TTAGCAACAC TGTTTTCCTC TCTATCCAAT CTCGGTGCGA AACAAGCCAA GAAACTGGCC GAAGGGCGAG ATATGGCTCG CCTAAGCTAT AAATTGGCAC AGCTACAAAC CGATTTACCC TTGAACATCA ACCTAAGGGA TTTTAGGGTC AACGGCCCCG CCAATACGCA GCAGGCAGAA TAA
|
Protein sequence | MNKFLIIDGL NLVRRIYAAI PDENDMDSLT DRVSVACTKL LRIHHPTHVA IVWDGDEISW RKQLYPDYKK GRKPMPEPLA AGLSALQEHL KSLPIQSIYA AAEADDVIAT LAMKTAKAQG EAVIVSTDKG FSQLNHPRIS QWDHFNQQYL NIAELEQKLG VDRNQFLDLM ALAGDSGNKI PGIAGIGPKS AAELLRTFRT LATLFSSLSN LGAKQAKKLA EGRDMARLSY KLAQLQTDLP LNINLRDFRV NGPANTQQAE
|
| |