| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2714 |
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| Symbol | |
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| ID | 4253285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3238765 |
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| End bp | 3240321 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638119349 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_734842 |
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| Protein GI | 113971049 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000423102 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGGATT CCAACGCGAC AGTGACACAG CTGGCATTGC TTCAGCAAAA ACTTCACTCG
GCAAAATTGG CCCTCGATGA AGTAAACGAA GATAGGAATG CTAAGTTACA GACACTACTC
CAATTTATTG GCCATTTAAG TCTTGCCTGC AAAGGGCAAA ATTTAGAACT GGATAATAAA
CTTGCTAAAC TTCGCCATAA TTTAAATACC TTTGAGCGAG TCGATGAAGC ATTGCCGGAG
TTGGTTGATG TTGAACGTCT ATTAAAGGGT CAGTACAACC ATGTAATGGT GCAACTTGAA
GAAAGCCGGA CAGGGCTTGC ACAGGTGGTC CGCCAGATCC AACGGGTTAA CTCGGCGCCC
GAAAAACTCA AAAAAGAAGT TAATTACTTT AAGCAGGATC TCTCAAAACC TTTCCACACA
GTGTGGGAAT ATATCCCTAA AGTTAAACAA ATCATCGGCT TCTACGATAT TATCCTGCAA
CAACAGTTCA ATGAGACGGA AAAGTTAGAT GTCTTGCCAA AACACAGACA ACTTGCCCAT
GAACTCGCGC AGATGATTTC GGAAATTGAA TTTCGTAAAG ATCAACGCGA CCAAGTGCTC
GTGATTAAAG AGCTGCTGGC ATCGGAAGTC GAAATCGACA CCTTGCTCGA AGCCTATCAA
ACCATTTTAT CCCTATTGCT CGACAACATC GCCCGCGAAA AATCGGCCTC ACAAGAGTTT
TTATACGCGC TAAACGATGC CTTAGCCGCT GTGCGTGAAG TGGTGAGTGA ATCCTACAAT
CACAACCAGC GCAGTTTTCA GCTAAAAACC CAGCTCAACC GTGAAATCAA TTCGCGTGTG
GATAATGTGG GTGAAGCCAT TATCGACACC GATGATATTG TCGATCTCAA GGCGCAATTG
ACCGAACAGC TCAACTCAAT CCGCTCCGCC CTCGCCCGCA AAGAAGCCTT AGAGCAGCGT
GAACAAGCCT TACTGCGCAA ATCGATGGAG ACCATGCGCA AAGAGCTTAA CGAGCTAAGT
AATGAGGCCA ACACCTATAA AGAGCGACTC TTCGAGCAAC AAAAACTCAA TCTATTGGAC
AGCCTAACCC AATTACCTAA CCGTGCCGCC CTCGAAGAGC GCATGGAACT TGAGTATCGT
AATTATCAGC GCCACAAAAC CCCGCTATGG ATTGCGGTGG CAGATATCGA CCACTTTAAG
AGTATCAATG ACAGCTTTGG CCACAGCACG GGCGATAAAA CCCTGCAGGT CATCGCCATG
GCATTAAAGA ACTCTCTACG GGATACCGAG TTTGTCGCCC GCTACGGCGG CGAAGAGTTT
GTGCTCATCC TGCCAGATAT TGGCGGAGGC GACATTGCTC AACTTTTAAA CAGAGTCCGT
GAAAAAGTAA AAAATATTCC ATTTAAATTT AAAAATCAGA GAATTACAGT TACAGTATCT
ATAGGGGCTG CGCAGGTTAT GGGGAACGAG CTCATACATG AAACCTTCGA GCGCGCCGAT
GCAGCACTCT ACAAAGCAAA ACATGAAAGC AGAGACAGGG TTGTGATTGA CGTATAA
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| Protein sequence | MKDSNATVTQ LALLQQKLHS AKLALDEVNE DRNAKLQTLL QFIGHLSLAC KGQNLELDNK
LAKLRHNLNT FERVDEALPE LVDVERLLKG QYNHVMVQLE ESRTGLAQVV RQIQRVNSAP
EKLKKEVNYF KQDLSKPFHT VWEYIPKVKQ IIGFYDIILQ QQFNETEKLD VLPKHRQLAH
ELAQMISEIE FRKDQRDQVL VIKELLASEV EIDTLLEAYQ TILSLLLDNI AREKSASQEF
LYALNDALAA VREVVSESYN HNQRSFQLKT QLNREINSRV DNVGEAIIDT DDIVDLKAQL
TEQLNSIRSA LARKEALEQR EQALLRKSME TMRKELNELS NEANTYKERL FEQQKLNLLD
SLTQLPNRAA LEERMELEYR NYQRHKTPLW IAVADIDHFK SINDSFGHST GDKTLQVIAM
ALKNSLRDTE FVARYGGEEF VLILPDIGGG DIAQLLNRVR EKVKNIPFKF KNQRITVTVS
IGAAQVMGNE LIHETFERAD AALYKAKHES RDRVVIDV
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