| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2713 |
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| Symbol | |
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| ID | 4253284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3236452 |
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| End bp | 3238614 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638119348 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_734841 |
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| Protein GI | 113971048 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.274552 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000574617 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCATAAAC TCATTGTTAT TTTCGTGACC TTGTTGATGT CTATTTCTTT TCAAACAAAG
GCTACCGATC TTGAGGCCGA AGAAATAGAA TTGCGTGAAA CGCCGCAGAA GATGTATGAC
AGACTTAATC AGTCCATCTC TTTTCCTATT GCCTTTAAGA ATCGTGAACA ATTTGAACGT
GCCGCCCAAG AGCAGGGTTA CAGCAGTGAT GAATTCGAGC ATATTCTGCA ACTGCTTGCG
CGGTTAAATC TCGAGCCGAA TGTGAAATCC AAGGTTGGCT TTCAAGACGC CAATAGCCTG
ATTGAATTAC TGGCAAGCAT AGCGCAGAGT CCCTTCGAAC AAGCCACAGT CGCTATGCTC
AAGGGGCGTT ATATCGGCCG TACCGAACAA AAATACCAAG AAGCCATCGC ATTTTATAAT
GAGGCGCTGA CACGGATTAA CGACAGTTAT GATGTGGAAT CCATGCTGCT AAAGCACACC
ATTCATGAAC ATTTAGGCGG ATTGCACCTC GTCATCCGCC AAGATGTGCC CGCATTAATG
CATTTTCATA CCTACCGCGA TATCGCCTAC AAGCTTAGAA ACGACTACCT TATCGCGGCG
GCCGAATCGA AACTTGGGCA TTATTACAAT AAAAATCAAC AACTCACTAA GTCATTGCAA
CACTATAGTG AAGCGATTCG CCTGTCTAAT CGCTCCAATT ATCCTTCGAT GAAAACCCAC
CTGCAGCTGC AACTGGCGAA GGTCTATCGT GATTTAAAAC AATGGGATGA AGCCTTAAAG
AATGCCCATG AGGCTGCCGC AGGCTTTAAA AAACTGGGCA ACGACACTTA TTTATCAAGC
TGTATGACGG TCATCGCCAT GGTGTATGGT GAACAAGGTG ATTGGAACCG CGCCATCGAT
TACTACCTGA ATGCCCAGCA GCTCGACGCC AAACGCGGTA ACTACATCGC GCAAGGGCTG
AATTTTCACA ATCTCGGCCA AGCCTATTCG CACTTACATG ATGAGGCGAA TGCCCTCAAA
TATTTGTTGA TGGCGAATCA GATATTTCAA GAAAAACAAA GCCATCACTA TTTAGTCTAT
AACGAACTGC TTATCGGTGA GATTGCCCAA TCGAAGGAAG ATTGGCCGTT AATGATGAAC
CACGCCGAAA ATGCCCTAGC CTTAGCAAGT GATTTACAAC TGCAGGACGA GCAAAAATCG
GCGCTGACGC AAATCGCCCT GTCAGCGGAA AAGCTCCACG ATCAAGCCAA AGTGATTAGC
ACGCAAAAGC GCATTATCGA ATTGAGCGAA GCACTCGAAA GCACCGCAAA AGATCCATCG
GTTTCCGCCT CAGTGCTGGC CGAGCAACAA CTCAAACTCG AACTCAGTAT GTTACAGGGC
AAACTGAACG ATGCAGTTGA AACCACTAAA AACACCAATA AATTACTCGC CTTTAGTGGC
CTGATTACCC TAGTGCTATT AGTCGGGATC ATCATCCTTA TCAATCAGCG CCGTAAGCAC
AAACGCCAAA ACGCCATGCT GCAACAGTTA AGCCTCGAAG AGCCTTTTAC TCACCATCAG
GGATATGCCG CGCTATTAAA GGATCTCGCC CAAAACCCAG CGAATGCGCC CACAACCGCC
CTCGCCTTAA TTGAATTTCG CGAGCATGTC AGTACCGACC TGCATCACGG CCAATATTTT
GCCAATGCCA TTACGCGCCA ATTAACTGGC CATATCACTA ATGCATTGTC GATGCCCGTC
TATGTGATCC GTCAAGGCTT GTTTGCCGTA AGATTTACCG AGGCAGAAGA ACCGCAGCGG
GTGTTACAAA CACTGAGGGC GCTGCTGGAT ACCAAAGGCA TGGGCTATCA TTTTAATTTA
GGCTTTATCA GTTTGCCGTT ATTAACCAAA GCAGAAATCA AAATTGCCCC TAAATTGCTG
TTTGAAACCC TCCAAATGGC CCTCGCAGGC GCGCGCAGTT TAACCAATGA CACTTGCCAT
TATGTGAGCC TAAGAGCTTT AGATTTTGTG CCACCGACAC TCTTTGCCGA TCCGCTGTTT
TTGCATCTCG AAAAAGGGAT TGAACGCGGC CTGATAAGAG TCGACACAGA TGCAAACAAG
GAAGACATTA TTTGGCCCTG TTGGGAAAAT AACCAAGATC GACATTTATT GGAAAATATT
TGA
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| Protein sequence | MHKLIVIFVT LLMSISFQTK ATDLEAEEIE LRETPQKMYD RLNQSISFPI AFKNREQFER
AAQEQGYSSD EFEHILQLLA RLNLEPNVKS KVGFQDANSL IELLASIAQS PFEQATVAML
KGRYIGRTEQ KYQEAIAFYN EALTRINDSY DVESMLLKHT IHEHLGGLHL VIRQDVPALM
HFHTYRDIAY KLRNDYLIAA AESKLGHYYN KNQQLTKSLQ HYSEAIRLSN RSNYPSMKTH
LQLQLAKVYR DLKQWDEALK NAHEAAAGFK KLGNDTYLSS CMTVIAMVYG EQGDWNRAID
YYLNAQQLDA KRGNYIAQGL NFHNLGQAYS HLHDEANALK YLLMANQIFQ EKQSHHYLVY
NELLIGEIAQ SKEDWPLMMN HAENALALAS DLQLQDEQKS ALTQIALSAE KLHDQAKVIS
TQKRIIELSE ALESTAKDPS VSASVLAEQQ LKLELSMLQG KLNDAVETTK NTNKLLAFSG
LITLVLLVGI IILINQRRKH KRQNAMLQQL SLEEPFTHHQ GYAALLKDLA QNPANAPTTA
LALIEFREHV STDLHHGQYF ANAITRQLTG HITNALSMPV YVIRQGLFAV RFTEAEEPQR
VLQTLRALLD TKGMGYHFNL GFISLPLLTK AEIKIAPKLL FETLQMALAG ARSLTNDTCH
YVSLRALDFV PPTLFADPLF LHLEKGIERG LIRVDTDANK EDIIWPCWEN NQDRHLLENI
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