| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2712 |
|---|
| Symbol | |
|---|
| ID | 4253283 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 3234500 |
|---|
| End bp | 3236311 |
|---|
| Gene Length | 1812 bp |
|---|
| Protein Length | 603 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638119347 |
|---|
| Product | peptidase M61 domain-containing protein |
|---|
| Protein accession | YP_734840 |
|---|
| Protein GI | 113971047 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00529287 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00000288485 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAAACCCA GTAGATTATC TATTTTGGTA TTAAGTGTAT TAGGGTCGGC TAACGTATTT
GCCGATGTGG ATTACAAAAT TGATTTAAGC CAACCAGAAC ATCACCTTGC GAAGGTGAGT
GTGACTTTCT CCGAGGCTAA AGCGGGTGAG TTCAATGTCA ATCTACCCGT GTGGCGTACG
GGCAAATACC AAGTGTTACC TCTATCCGAC GGTGTGCGTT TATTTAGCGC GACCGATGCT
CTTGGCAACG CTCTACCATG GAAACGCACC GCCAGCGGTG AATGGCAAAT TGCCCTCGAT
AAGCCCACCA GCGTGACAGT GAATTATCAG CTCTATGCCA ATGAATTAGG TCAACGTGTG
CGTCATATCG ATGCTACCCA CGCCTATTTA GATGCCAGTG GCGTATTTAT GTATAGCCCG
CAATTTCGAG CCGATGCTGT TGCAGTACAA TTAACGGTTC CCGAAAACTG GCAAAGCTAT
TCGGGTATGT CGTCAGGTAA CGCGGCGCAT TCCTTTGTGG CGCCTAATTA TGATGTGCTG
ATTGATTCGC CCATCGAAAC CGGCGTGAGC ACCCACAAAA CCTTTAGCGC TAATGGTAAA
GATTATGAGT TAGTGCTGTG GGGCGAAGGC AACTACGATG CCGACAAGGT GGTGAAAGAT
TTAACCGCGC TGAGTGGTCA AGCCAAGGCG ATTTGGGATG GTTATCCCTT TGAGCGTTAT
GTGTATATGG TGCACGCCAC TAGCGGCGCG AGTGGCGCAA CCGAACATTT GAACTCGACG
GTCATCCAAC TGCCTCGGTT TAGTTTTCGC GAGCGTAAGG ACTACCTACG CTTTATCAGC
ACCGCCTCCC ATGAGTTTAT TCATACCTGG AACGTTAAAG CCTATCGTCC AGCGGGGTTG
GTCCCTTACG ATTATCAGCA TGAAAACATG ACCGAACTTT TGTGGATTGC CGAGGGCTCG
ACCAGTTATT TCCAAGGTCA GTTACTGCTG CGTGCAGGAG TGATGACGCC TAAGGAGTTT
TTAGAAGATC TCGCTAAACG CATTGAGAAG AGTGAGCTGA CTCCCGGACG CGAAATTCAA
TCTGTGGCCG AGGCCAGTTT AGGGGAGTGG AGCAGCACGG GTGGTGATTA TGCTATTAAC
CACAGTGTGA ATATTTACTC TGAAGGTTAT TTAACCTCAC TGGCGCTGGA TTTCTCCCTG
CTGACCGACT CGAATCTTGC CCACTCGTAC CGCGATGTAC ACCGTAAACT CTATCAGGAT
TACCGCGTGC CTAAGGGTTA CACTGTGGCC GATGTGCAGC AAATTCTGAA GGATTTATCG
GGTAAGGATT ATGGCCCCTG GTGGCAGAGC CATGTGAATA GTCCGCTGAG TCTTGAGTTT
TCAAGCCTGT TGTCTCAGGC TGGTTTAGTC ATGTCCTATG GTAAAGACTC TAAAGCTGAG
CCTTTTACGG GCATGACTTT AAGCAGCGAA CATGGCTCTT TAGTGCTTTC TCAAGTCTTG
CGTAATGGCC CCGCGTGGCA GGCCGGTATC GTGGCAGGGG ATGAAATCCT CGCGATTAAT
GGCTTAAAGG TCACGGCACA AGGTTTTGAT AAACGCATCA AAGACTTTAA AGTGGGTGAT
AAAGTCGAAA TCACCTTATT TAACAACGAC AAAATCAAGC AAGTGGCGTT AACCTTAGGT
GAGAAACAAA GCGGTAAGCT AGCGCTAAAA GGCGATGCAA AGGCGACTAA GCAGCAAAAA
GCCTTCTTCA AAGCCTGGCT TGGCATTGAT TGGCCGTTCG ATAATAAGGG TGAGCTGCTG
ACGAAAAGCT AA
|
|---|
| Protein sequence | MKPSRLSILV LSVLGSANVF ADVDYKIDLS QPEHHLAKVS VTFSEAKAGE FNVNLPVWRT
GKYQVLPLSD GVRLFSATDA LGNALPWKRT ASGEWQIALD KPTSVTVNYQ LYANELGQRV
RHIDATHAYL DASGVFMYSP QFRADAVAVQ LTVPENWQSY SGMSSGNAAH SFVAPNYDVL
IDSPIETGVS THKTFSANGK DYELVLWGEG NYDADKVVKD LTALSGQAKA IWDGYPFERY
VYMVHATSGA SGATEHLNST VIQLPRFSFR ERKDYLRFIS TASHEFIHTW NVKAYRPAGL
VPYDYQHENM TELLWIAEGS TSYFQGQLLL RAGVMTPKEF LEDLAKRIEK SELTPGREIQ
SVAEASLGEW SSTGGDYAIN HSVNIYSEGY LTSLALDFSL LTDSNLAHSY RDVHRKLYQD
YRVPKGYTVA DVQQILKDLS GKDYGPWWQS HVNSPLSLEF SSLLSQAGLV MSYGKDSKAE
PFTGMTLSSE HGSLVLSQVL RNGPAWQAGI VAGDEILAIN GLKVTAQGFD KRIKDFKVGD
KVEITLFNND KIKQVALTLG EKQSGKLALK GDAKATKQQK AFFKAWLGID WPFDNKGELL
TKS
|
|---|
| |