Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2711 |
Symbol | rdgC |
ID | 4253282 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3233358 |
End bp | 3234272 |
Gene Length | 915 bp |
Protein Length | 304 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638119346 |
Product | recombination associated protein |
Protein accession | YP_734839 |
Protein GI | 113971046 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2974] DNA recombination-dependent growth factor C |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000015542 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00000164206 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTGGTTTA AAAATCTTAC TCTTTACCGT TTCAATAAAC CTTTTTCCAT CGAGACAGAA GCACTTGAAA CCGCACTCGC CGATTTCACA TTTTCCCCAT GCGGCAGCCA AGACGTCAGC AAATTTGGTT TTTCCAATGC CTTAGGTAAA CAAGGCAGCA CCTTAGTGCA CAGCGCCAAT AATCGTCACC TTATCTGTGT CACTAAAGAA GAAAAAATTC TGCCAGGCCA AGTGATTAAA GAATCATTAG AAGAAAAAGT GGCGCTAATT GAAGACGAAG AAAATCGTAA GCTCGCCAAA AAAGAAAAAG ATGCGCTGAA AGATGAAATC ATCACTAGCC TATTACCACG CGCCTTTTCA CGTCGCAGCC AAACTCGCGC GCTGATTTTA CCTGAGCTGG AAATGATCCT CGTTGATAGC TCTAGCGCCA CTAAAGCCGA AGAATTATTA GCCTTATTAC GCAAGGCCTT AGGTAGCTTG CCAGTGATCC CATTAAGCTT TAAAGCGCCA GTTGAATCGA ACCTCACTCA ATGGTTAAAA GATGGCAGCG CACCATTACC CTTTGAAATG CAAGATGAAG CCGAGTTGAA ATCGGCCGCC GATGAAGGCG GTATCGTGCG CTTTAAGCAG CAAGATCTGA AAGAAGATGA AGTACTTGCC CACCTTGAAA CCGGCAAAGA AGTGCATAAG CTCGCCCTGC ACTTTGGCCA ATCAATTGCG CTACTGCTGC AATCCGACGC CAGCGTAAAA CGCTTAAAAT TCTCCGAAGA ATTTAGAGCG GGTAATGATG AGCTAGGTAA TGAAGATCCA ATGGCGCGTC TCGATGCCGA CTTTGCCTTA ATGGGCAGTG AGTTAGTCGC GCTGATGCAC GCCCTAGTTT CGGCATTAGG CGGCCTTGAA GAGACTCAAG CTTAG
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Protein sequence | MWFKNLTLYR FNKPFSIETE ALETALADFT FSPCGSQDVS KFGFSNALGK QGSTLVHSAN NRHLICVTKE EKILPGQVIK ESLEEKVALI EDEENRKLAK KEKDALKDEI ITSLLPRAFS RRSQTRALIL PELEMILVDS SSATKAEELL ALLRKALGSL PVIPLSFKAP VESNLTQWLK DGSAPLPFEM QDEAELKSAA DEGGIVRFKQ QDLKEDEVLA HLETGKEVHK LALHFGQSIA LLLQSDASVK RLKFSEEFRA GNDELGNEDP MARLDADFAL MGSELVALMH ALVSALGGLE ETQA
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