| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2701 |
|---|
| Symbol | |
|---|
| ID | 4253272 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3221628 |
|---|
| End bp | 3222479 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638119336 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_734829 |
|---|
| Protein GI | 113971036 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5006] Predicted permease, DMT superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00447474 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0000895819 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCACCCT TATTGATGAT TCTAGCTGCC CAGTTGTTGA TTGCCAGCGG TAACCTATTG
GTTAAATTGC TTGAAACGAA TGCCCCCGTG TTTCAACTGG TGCTTTATCG CCAATTATTC
GCCACGCTCT TAGTATTACC TTTTGTTTGG CGGCTACAGG GGAACCTTAA GTTAAGCCCC
TTTTACAAGG TGCACTTGAG CCGAGCGCTA TTAATCGGGC TAGGTAATGC CATCTTTATG
CTGGCGGTAC TGCACTTACC TTTAGCGACT GTGACTGCAG TCATTTATAC ATCACCGTTA
TTACTGTTGT TATTGTCCGC CTTCTTTTTA AATGAGCGTA TTGGTTATCG TCGCACCGTC
GCGGGGATTA TCGGTTTTAC GGGCATTTTG CTGATAAGCC AGCCGACAGA ATTTAACCTC
TATATCGGTC TAGCCTTTTT TGGCGCTATG ACCTCAGCAA CCAACAGCCT CATTTTGAAG
GCATATTCAA CCCATGAGCA TCCCTTTTCA ACACTCTTTT GGTCTAATGC CTTTGCCATG
GTTTTTCTGA TACCGGCAAC CTGGTACGAA GGCGCCGACT TTAGCCTGCC CGTCGCGCAA
GTTGGTTTGG CCTTAGGCCT GTTTTATATC GGTATGACCT ACCTCATTAT CCACGCCTAT
CGGCGTGCCG ATGCCAGCCA AATGGCGCCC GTGGAATACA CAGGCCTTAT TTTTGCCGCA
TTGTTTGGTT GGTGGTTTTT GGATGAGCAC TTAAGCATTG TGGTGTGTAT TGGTATAGGA
CTGGTGATCT TCTCCTCCAT CCTGCCAAGC TACAGCGAAC TGAAAGCCAA ATGGAAAAGC
CGGCGAAGTT AA
|
|---|
| Protein sequence | MAPLLMILAA QLLIASGNLL VKLLETNAPV FQLVLYRQLF ATLLVLPFVW RLQGNLKLSP
FYKVHLSRAL LIGLGNAIFM LAVLHLPLAT VTAVIYTSPL LLLLLSAFFL NERIGYRRTV
AGIIGFTGIL LISQPTEFNL YIGLAFFGAM TSATNSLILK AYSTHEHPFS TLFWSNAFAM
VFLIPATWYE GADFSLPVAQ VGLALGLFYI GMTYLIIHAY RRADASQMAP VEYTGLIFAA
LFGWWFLDEH LSIVVCIGIG LVIFSSILPS YSELKAKWKS RRS
|
|---|
| |