Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2635 |
Symbol | |
ID | 4253206 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3140428 |
End bp | 3141618 |
Gene Length | 1191 bp |
Protein Length | 396 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638119270 |
Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
Protein accession | YP_734763 |
Protein GI | 113970970 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000380422 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0527781 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAAATA TGGTGATTTT GGGCGCAACT GGGTCGATTG GTGCCAGCAC TTTAAGTGTA ATTTCGGCTA ATCCCGATGC CTATCGTGTT TACGCTTTAG TGGCGAATGC GAGTGTCGAT AAGATGCTCG CCCTGTGTAT AACCCATCGC CCACAAGTCG CCCATATGGT CGATAGTCAG GCCGCATTAG CGCTACAAGC CAAGCTTCCC CCTGAGCTTA ATATCCAAGT CAGTAGCGGT GAGGATGAAC TCATCGCCTT AGTCACAGCC ACTGAAGTGG ATACTGTGAT GGCCGCTATC GTCGGCGCAG CGGGGCTTGT GCCAACCTTA GCCGCCGTCA AGGCGGGTAA GCGAGTATTG CTTGCCAATA AAGAGGCCTT GGTGATGTCA GGTGAACTCT TTATTGAGGC CACCAAAGCC TCTGGCGCCA CTTTGCTGCC CGTTGACAGT GAGCACAATG CGATTTTCCA ATGTTTACCC GAAGAGGTGC AGGCCAATTT AGGCCGCTGT GATTTAGCCG CATCGGGCAT TTCCCATATT TTGCTGACAG GCTCTGGTGG TCCCTTTTTG ACGGCTGAGC TTGCAAGTCT TGCTGCGATG ACACCTGCGC AGGCCTGTAA ACATCCAAAC TGGTCGATGG GGCCGAAAAT TTCAGTCGAC TCCGCCACTA TGATGAATAA AGGTTTGGAG TTTATCGAAG CGCGCTGGCT GTTTAATACT CAGAACGACC AATTAAAGGT GGTTATCCAT CCGCAGAGTG TTATCCATTC GATGGTGCAA TACCGTGATG GCAGTGTTAT CGCGCAAATG GGTAACCCGG ATATGCGTAC GCCGATTGCG CATTGTATGT CCTATCCACA AAGAATTAGC TCTGGCGTTG AACCTTTGGA TTTTTTCAAA GTCGGACAGT TAAGCTTTTG TGAACCAGAC TTTAATCGCT TTCCCTGTTT GGCATTAGCG ATTGCCGCTT GCGCCCAAGG CCAAGAGGCC ACAACTGTGC TCAATGCCGC CAATGAGATT GCCGTTGAGG CATTTTTACA GGGGCAGATT GGTTTTACCC ATATCGCTAA GGTGAATGAA GCGTGTTTAT CATCAGTGCC TAAACGGGCA ATGACCAGCA TCGATGATAT TATTGCCCTC GATGCGCAAA CGCGGATATA TGCCCGCGAA CAGTTAGCGA AATTGGCTTA A
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Protein sequence | MQNMVILGAT GSIGASTLSV ISANPDAYRV YALVANASVD KMLALCITHR PQVAHMVDSQ AALALQAKLP PELNIQVSSG EDELIALVTA TEVDTVMAAI VGAAGLVPTL AAVKAGKRVL LANKEALVMS GELFIEATKA SGATLLPVDS EHNAIFQCLP EEVQANLGRC DLAASGISHI LLTGSGGPFL TAELASLAAM TPAQACKHPN WSMGPKISVD SATMMNKGLE FIEARWLFNT QNDQLKVVIH PQSVIHSMVQ YRDGSVIAQM GNPDMRTPIA HCMSYPQRIS SGVEPLDFFK VGQLSFCEPD FNRFPCLALA IAACAQGQEA TTVLNAANEI AVEAFLQGQI GFTHIAKVNE ACLSSVPKRA MTSIDDIIAL DAQTRIYARE QLAKLA
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