Gene Shewmr4_2635 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2635 
Symbol 
ID4253206 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3140428 
End bp3141618 
Gene Length1191 bp 
Protein Length396 aa 
Translation table11 
GC content50% 
IMG OID638119270 
Product1-deoxy-D-xylulose 5-phosphate reductoisomerase 
Protein accessionYP_734763 
Protein GI113970970 
COG category[I] Lipid transport and metabolism 
COG ID[COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase 
TIGRFAM ID[TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000380422 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0527781 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAAATA TGGTGATTTT GGGCGCAACT GGGTCGATTG GTGCCAGCAC TTTAAGTGTA 
ATTTCGGCTA ATCCCGATGC CTATCGTGTT TACGCTTTAG TGGCGAATGC GAGTGTCGAT
AAGATGCTCG CCCTGTGTAT AACCCATCGC CCACAAGTCG CCCATATGGT CGATAGTCAG
GCCGCATTAG CGCTACAAGC CAAGCTTCCC CCTGAGCTTA ATATCCAAGT CAGTAGCGGT
GAGGATGAAC TCATCGCCTT AGTCACAGCC ACTGAAGTGG ATACTGTGAT GGCCGCTATC
GTCGGCGCAG CGGGGCTTGT GCCAACCTTA GCCGCCGTCA AGGCGGGTAA GCGAGTATTG
CTTGCCAATA AAGAGGCCTT GGTGATGTCA GGTGAACTCT TTATTGAGGC CACCAAAGCC
TCTGGCGCCA CTTTGCTGCC CGTTGACAGT GAGCACAATG CGATTTTCCA ATGTTTACCC
GAAGAGGTGC AGGCCAATTT AGGCCGCTGT GATTTAGCCG CATCGGGCAT TTCCCATATT
TTGCTGACAG GCTCTGGTGG TCCCTTTTTG ACGGCTGAGC TTGCAAGTCT TGCTGCGATG
ACACCTGCGC AGGCCTGTAA ACATCCAAAC TGGTCGATGG GGCCGAAAAT TTCAGTCGAC
TCCGCCACTA TGATGAATAA AGGTTTGGAG TTTATCGAAG CGCGCTGGCT GTTTAATACT
CAGAACGACC AATTAAAGGT GGTTATCCAT CCGCAGAGTG TTATCCATTC GATGGTGCAA
TACCGTGATG GCAGTGTTAT CGCGCAAATG GGTAACCCGG ATATGCGTAC GCCGATTGCG
CATTGTATGT CCTATCCACA AAGAATTAGC TCTGGCGTTG AACCTTTGGA TTTTTTCAAA
GTCGGACAGT TAAGCTTTTG TGAACCAGAC TTTAATCGCT TTCCCTGTTT GGCATTAGCG
ATTGCCGCTT GCGCCCAAGG CCAAGAGGCC ACAACTGTGC TCAATGCCGC CAATGAGATT
GCCGTTGAGG CATTTTTACA GGGGCAGATT GGTTTTACCC ATATCGCTAA GGTGAATGAA
GCGTGTTTAT CATCAGTGCC TAAACGGGCA ATGACCAGCA TCGATGATAT TATTGCCCTC
GATGCGCAAA CGCGGATATA TGCCCGCGAA CAGTTAGCGA AATTGGCTTA A
 
Protein sequence
MQNMVILGAT GSIGASTLSV ISANPDAYRV YALVANASVD KMLALCITHR PQVAHMVDSQ 
AALALQAKLP PELNIQVSSG EDELIALVTA TEVDTVMAAI VGAAGLVPTL AAVKAGKRVL
LANKEALVMS GELFIEATKA SGATLLPVDS EHNAIFQCLP EEVQANLGRC DLAASGISHI
LLTGSGGPFL TAELASLAAM TPAQACKHPN WSMGPKISVD SATMMNKGLE FIEARWLFNT
QNDQLKVVIH PQSVIHSMVQ YRDGSVIAQM GNPDMRTPIA HCMSYPQRIS SGVEPLDFFK
VGQLSFCEPD FNRFPCLALA IAACAQGQEA TTVLNAANEI AVEAFLQGQI GFTHIAKVNE
ACLSSVPKRA MTSIDDIIAL DAQTRIYARE QLAKLA