| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2633 |
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| Symbol | |
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| ID | 4253204 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3136495 |
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| End bp | 3138975 |
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| Gene Length | 2481 bp |
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| Protein Length | 826 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638119268 |
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| Product | surface antigen (D15) |
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| Protein accession | YP_734761 |
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| Protein GI | 113970968 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000445373 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.203506 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGATTGA ATAAACTTTT TGCCTCGATG TTATTCGTCG GTGCGTCGTT TTCAGGGACT
GTGTTGGCGG ATACTTTCCA ACCCTTTGAA GTGACCGACA TCCAAGTTGA AGGTTTGCAG
CGAGTCGCAC TGGGTGCTGC CTTGTTAAGC TTACCAGTGA AAGTGGGTGA CACTGTTGAC
CAGTTAAAGA TTCAGCAAGC CATTAAAAGC CTGTATGCAT CGACTAACTT TGAAAATATC
ACTGTTAGTC GTGATGGTGG CGTATTGATT GTCAAAGTCA CTGAGCGGCC AACGATCAGC
GCCGTGACTT TTGAAGGCAA CAAAGACATT AAAGATGAGC AGTTACAGGA AAGTCTGGAT
GGCTCAGGCG TGAAAGTCGG CGAGTCCTTA GACCGTACTA TGCTGACAGG CATCGAGAAG
GGATTACAAG ACTTCTACTA CGGTGTAGGT AAATACGGTG CGAAAGTTGA AGCGCAGGTG
ATTAACTTAC CCCGTAACCG TGTCGAATTA AAATTTAAGT TTACTGAAGG TTTAGCTGCT
GAAATTCGCC AAATTAACGT GGTTGGCAAC AAAGAGTTCA CCGATGCTGA GCTTATCGGC
ATGTTAGAAC TCAAAGACTA CGTGGCTTGG TGGGATCTGT TCGGTGAGCG TCGCTATCAG
AAGCAAAAGC TGCAAGCCGA TCTTGAAACC ATTAAAACCT ATTATCACAA CAAGGGTTAT
ATCCGCTTTG AAGTCACCTC GACGCAAGTG GCGATGACGC CTGACCGTAA AGGTTTGTAT
ATCACCATCA ACGTCAACGA AGGTGAGAAG TACAAGGTTA AAGACGTTAA CCTCACCGGC
GACTTAATGG GCCGCGAAGA GTTAATGAGA TCGATTCTGC CAATTAAGGC GGGCGATATG
TACAACGGCG GTGATGTGAC CTTCACCGAA GAGATGTACA GTAAATATTT AGGCCGTTTC
GGTTACGCTT ACCCTGAAGT GAAAACCTAC CCTGAAATTG ATGATAAGAC TAAGGAAGTC
ACCTTAAACA TCAATATCAA ACCGGGTAAA CGTGTGTATG TGCGTTCGGT TAACTTCACC
GGTAACACTG TCACTAAAGA TGAAGTGATG CGCCGCGAAC TGCGTCAGAT GGAAGGTGCT
TGGTTAAACT CGGCGCAGGT TGAGCAATCT AAAGCTCGTC TAAACCGTTT AGGCTTCTTC
GAGACCGTTG ATACCGAAAC CATTCAAGTG CCAGGTACCG ACGATTTAGT CGATGTGGCC
GTGAAGGTTA AAGAGCAGCC ATCGGGCTCA TTTAACGCCG GTGTGGGTTA TGGTACTGAA
TCGGGCTTAA GTCTGCAGTT TGGTGTGCAG CAAAATAACT TCCTCGGTAC GGGTAACCAA
GCGGGCGTGA GTTTAAGCAC TAACAAGTAC TCTAAGAACG TTAACTTATC TTACACCGAT
CCATATTGGA CCAAAGATGG TGTGAGCTTA GGTGGTAGCG TTTATTGGAA CGAGTTCGAT
GCGAATGAAG CGAACCTTGA ACGCTATAAG AACAGTTCCT ACGGCGTGGC ATTGAATTCA
GGTTTCCCGA TTAACGAATA TAACCGTATC AACGGTGGTA TTGGCTATCG TCATAACACG
ATTTCAGAAA TCTCTGCCTA CGAGCAGGCG CTGCGTTTCT ACAATATCTA CCGTGACGAT
GATCCAAATG CCGATTTAAG CTTCGATAAC TTTGAGCTGA GCTTAGGTTG GTACCGCAGC
ACGCTAAACC GTGGCACCTT CCCAACGGAC GGTTCGTCAC AGCGTTTAAG CGGTAAGATG
ACAGTACCGG GCTCGGATCT GCAGTACTTT AAGACTGACT TCGATACTAA CTATTATTTC
CCCATCAACC GCAGCCACAG TTTTGTGCTA TTAGCGCGCG GTCGTTTAGG TTATGGCAAC
GGCTATGGTC AATTCAACGA TAATGACCAA ATCCTGCCAT TCTGGGAAAA CTATTACTCG
GGCGGGAGTA CCTCACTGCG TGGCTTTAAG TCTAACTCGG TCGGTCCACG TTCATTCTAC
CTCTTCCGTG GTAGTGAGCC TTGTGCGCCG GATCCATCGG GTGACGGTTG TAGCTTACCG
GGCGATCCAA ACAGTATTCA GGTCAGTTCA GGTCGTTCTA TCGGTGGTAA CGCGATTGCA
ACTGCCAGTA TGGAGTTGAT TGTACCAACG CCATTCTTGG ATGAGGCTTA CGCTAACTCT
GTACGTACCA GTTTCTTCGT CGATGCGGGT AACGTGTGGG ATACTGAGTT TGATTTTGCT
AAGTATCAAA CCCTGCCTGC GGAAGAGTTT GATAAGTTGC AGGACTACAG TGATCCTGGC
CGTATCAGAG CGTCTTGGGG GTTAAGCTTA CAGTGGCTGT CTCCTATGGG CCCAATGGTA
TTCAGCTTGG CATGGCCGAT TAAAGAATAC GAAGGCGATC AAACAGAGAT CTTCTCGTTC
AATATTGGCA AAACTTTTTA A
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| Protein sequence | MRLNKLFASM LFVGASFSGT VLADTFQPFE VTDIQVEGLQ RVALGAALLS LPVKVGDTVD
QLKIQQAIKS LYASTNFENI TVSRDGGVLI VKVTERPTIS AVTFEGNKDI KDEQLQESLD
GSGVKVGESL DRTMLTGIEK GLQDFYYGVG KYGAKVEAQV INLPRNRVEL KFKFTEGLAA
EIRQINVVGN KEFTDAELIG MLELKDYVAW WDLFGERRYQ KQKLQADLET IKTYYHNKGY
IRFEVTSTQV AMTPDRKGLY ITINVNEGEK YKVKDVNLTG DLMGREELMR SILPIKAGDM
YNGGDVTFTE EMYSKYLGRF GYAYPEVKTY PEIDDKTKEV TLNINIKPGK RVYVRSVNFT
GNTVTKDEVM RRELRQMEGA WLNSAQVEQS KARLNRLGFF ETVDTETIQV PGTDDLVDVA
VKVKEQPSGS FNAGVGYGTE SGLSLQFGVQ QNNFLGTGNQ AGVSLSTNKY SKNVNLSYTD
PYWTKDGVSL GGSVYWNEFD ANEANLERYK NSSYGVALNS GFPINEYNRI NGGIGYRHNT
ISEISAYEQA LRFYNIYRDD DPNADLSFDN FELSLGWYRS TLNRGTFPTD GSSQRLSGKM
TVPGSDLQYF KTDFDTNYYF PINRSHSFVL LARGRLGYGN GYGQFNDNDQ ILPFWENYYS
GGSTSLRGFK SNSVGPRSFY LFRGSEPCAP DPSGDGCSLP GDPNSIQVSS GRSIGGNAIA
TASMELIVPT PFLDEAYANS VRTSFFVDAG NVWDTEFDFA KYQTLPAEEF DKLQDYSDPG
RIRASWGLSL QWLSPMGPMV FSLAWPIKEY EGDQTEIFSF NIGKTF
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