| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2628 |
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| Symbol | lpxB |
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| ID | 4253199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3132365 |
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| End bp | 3133522 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638119263 |
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| Product | lipid-A-disaccharide synthase |
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| Protein accession | YP_734756 |
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| Protein GI | 113970963 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0763] Lipid A disaccharide synthetase |
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| TIGRFAM ID | [TIGR00215] lipid-A-disaccharide synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00918901 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0975507 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAAA AATCTCAATT AGTGTTTGCA ATGGTCGCCG GAGAACTCTC CGGCGATATT
TTAGGTGCAG GTTTAATGGC CGCACTGCAA AAAACACACC CCAACGCCCG TTTTGTCGGT
ATTGGTGGAC CTCGAATGGA AGCCCTAGGC TTCGAATCCC TGTTCGCGAT GGAGGAATTA
GCCGTGATGG GGATAGTCGA AGTGCTATCA CGCCTGCCAC GCTTACTCCA TGTGCGCTCA
TCCCTGATTA AGTCCATCAC CGAACTTAAG CCCGATTGCT TTATCGGGAT CGATGCACCG
GATTTTAATA TCGGTCTTGA GCTTAAGTTA AAGGCGCAGG GGATTAAAAC CGTTCACTAC
GTGAGCCCTT CGGTATGGGC ATGGCGTCCT AAGCGTATTT TTAAAATCGC TAAGGCCACC
AATATGGTGC TGTCGTTATT ACCCTTTGAA AAGGCCTTTT ACGATAAGCA TCAGGTGCCT
TGTACCTTTG TCGGCCATAC CTTGGCTGAC GATATTCCGT TAGAGAGTGA TAAGGCGAGC
GCCCGTCAGT TGCTTGAGCT CGATCCTGAT GCCGAATACC TCGCGATTTT ACCCGGCTCA
CGCGGCGGCG AATTAAAACA ATTGGCCGAG CCTTTCGTGA AGGCGGCGCT GCTTATCAAG
CAGCAATTTC CCGATATTCG CTTTGTGACG CCTTTAGTGA ATCAAAAGCG CCGTGAGCAG
TTTGAGCAGG CATTAAAAGC GCATGCGCCG GATCTGGAAA TCCACATGGT GGAAGGCAAA
TCACGCGAAG TGATGGCTGC TGCCGATGGC ATTTTACTGG CGTCGGGTAC GGCAACCTTA
GAAGCTATGC TGATCAAGCG TCCAATGGTG GTGGCGTATC GAGTGAGTCC GCTGACCTAT
CAGATTGCGA AAACCATGAT GCAAGTGAAC CGTTTCTCCC TGCCGAATCT TTTAGCGGGG
CGAGACGTGG TGCCCGAGCT TATTCAGCAT GATTGCACGC CAGAGAAGAT TGCCGCTGCG
GTTGGCGTTG AGCTGAACCG CGACTTTGCG CCAATCAAAG CTGAGTTTGA GCGTTTGCAC
CAAATGCTGC GCTGCGATGC CAGCCAAAAA GCGGCTGAGG CGGTGTTAGC ACTGGTCGAT
GCTAAGGATG TGAACTAA
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| Protein sequence | MSKKSQLVFA MVAGELSGDI LGAGLMAALQ KTHPNARFVG IGGPRMEALG FESLFAMEEL
AVMGIVEVLS RLPRLLHVRS SLIKSITELK PDCFIGIDAP DFNIGLELKL KAQGIKTVHY
VSPSVWAWRP KRIFKIAKAT NMVLSLLPFE KAFYDKHQVP CTFVGHTLAD DIPLESDKAS
ARQLLELDPD AEYLAILPGS RGGELKQLAE PFVKAALLIK QQFPDIRFVT PLVNQKRREQ
FEQALKAHAP DLEIHMVEGK SREVMAAADG ILLASGTATL EAMLIKRPMV VAYRVSPLTY
QIAKTMMQVN RFSLPNLLAG RDVVPELIQH DCTPEKIAAA VGVELNRDFA PIKAEFERLH
QMLRCDASQK AAEAVLALVD AKDVN
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