| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2626 |
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| Symbol | dnaE |
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| ID | 4253197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3128142 |
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| End bp | 3131618 |
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| Gene Length | 3477 bp |
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| Protein Length | 1158 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638119261 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_734754 |
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| Protein GI | 113970961 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0206088 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGATC CTCGTTTTGT GCATCTTCGT GTCCACAGTG ACTTCTCTAT GTCCGATGGT
GTGGCTAAGG TCAAACCCAT CCTCGCCCAA GTTGAGGCTA AGGGTATGGC TGCGGTGGCC
TTAACGGATC AAAACAACCT CTGCGGTCTG GTCAAGTTTT ATGGTGGTTG CCATGGTGCG
GGGATTAAGC CGATTATTGG CGCGGACTTT TGGATGCAAG TGCCGGGGTT TGATGACGAG
TTTTGTGCCT TAACCATTAT TGCGATGAAT AATGATGGCT ATCAAAATCT CACCCAAATC
ATCAGCCAAG CCTATCTACG GGGCCATGTG GCTGGGCGGG TGGTGATTGA CCAAGAGTGG
CTTGTCACCT ACAACGAAGG CATTTTATTG CTGTCTGGTG GGAAAGAAGG GGACGTGGGT
AAGGCGCTGC TTAAGGGCAA CAATACTCAA GTCGAGTCCT TATGCGAGTT TTATCAGCAA
CATTTTGAAG GGCGTTATTA CCTCGAATTA TTGCGCACGG GGCGCACCGA TGAGGAACGT
TACCTGCATA TGGCGGTGGG GCTCGCGCAG GAAAAGGGCA TTCCCGTGGT CGCCACCAAT
CAGGTGGTAT TTTTAAAACC CGAAGACTTC GAGGCCCATG AGATCCGCGT TGCGATTCAC
GATGGTTTTA CGCTTGCCGA TCCCCGTCGT CCTAAAAAAT ACAGTGAGCA GCAATATCTT
CGCAGCGAAG AGGAAATGTG CGAGCTATTT GCCGACATTC CCGCCGCGCT CGAAAATACC
GTTGAAATTG CCAAACGCTG CAACGTTACC ATTCGCTTAT ACGAATACTT CTTACCGAAC
TTCCCCACTG GCGATATGTC GATTGAGGAT TATCTGGTTG ATTGCTCTAA GAAGGGGCTC
GAAGAACGCT TAGAGTTCTT ATTCCCCGAT CCACAAGTGC GCGCCGAGCG CCGCGGCGAA
TATGACGAGC GTCTCGATGT GGAGCTAAAA GTTATCAACC AGATGGGCTT CCCCGGTTAC
TTCCTTATCG TGATGGAGTT TATTCAGTGG GGTAAGGATA ACGGCATTCC CGTTGGTCCC
GGTCGTGGTT CGGGCGCGGG TTCCCTTGTG GCCTATGCCC TTAAGATTAC CGACTTAGAC
CCCTTAGAAT TCGACCTGCT GTTCGAACGA TTCCTCAACC CAGAGCGGGT ATCTATGCCC
GACTTCGACG TCGACTTCTG TATGGATAGG CGTGATGAGG TCATTGACCA CGTGGCCGAG
CTCTACGGCC GTGAGGCGGT ATCGCAGATC ATTACCTTCG GTACCATGGC GGCCAAGGCG
GTTATCCGCG ACGTGGGTCG TGTGCTCGGC CATCCCTATG GCTTTGTGGA CCGCATTTCT
AAGCTTATTC CGCCAGAGCC AGGCATGACA CTCGCCAAGG CCTTTGAAGT GGAGCCTGCG
CTGCAGGAGT CCTACGATGC CGATGAGGAT GTGAAAGATC TTATCGACAT GTGCCGTAAA
CTCGAGGGGG TGACCCGTAA CGCCGGTAAG CATGCAGGGG GCGTGGTTAT TGCGCCCACC
AAGATCACCG ACTTCTCGCC GCTTTACTGC GACGCCGAAG GTAAAAACCC GGTAACCCAG
TTTGATAAGA ACGACGTGGA AACCGCCGGC TTAGTCAAAT TCGACTTCTT AGGGTTAAGA
ACCCTGACCA TCGTCGACTG GGCGCTGGAG ATGATCAACA AGGTGGAGGT TAAAAATGGC
CGTCCACCGG TGCGGATTGA GGCGATTCCC CTAGACGACC CAGCTTCGTT CCGCTTGCTG
CAACGCTACG AAACCACCGC GGTATTCCAG CTCGAATCTC GTGGTATGAA GGATTTGATT
AAGCGTCTGC AACCTGACTG CTTCGAAGAT ATGATCGCAC TCGTGGCACT GTTCCGCCCG
GGGCCTCTGC AATCGGGCAT GGTGGATAAC TTTATCGAGC GTAAGCATGG TCGTGAAGAG
GTGTCTTACC CTGATTCTCA ATACCAGCAT GAATCCTTGA AGGAGCTGTT GTCGCCCACC
TACGGCATTA TTTTGTACCA AGAGCAGGTG ATGCAGATTG CGCAGGTGCT ATCGGGTTAT
ACCTTAGGTG GCGCGGACAT GCTGCGCCGC GCTATGGGTA AGAAAAAGCC TGAGGAGATG
GCCAAACAGC GCGGTACCTT TAAAGAAGGG GCGATTAAGA ACGGCGTCGA CGGCGAGTTG
GCGATGAAGA TCTTCGACTT AGTGGAAAAG TTTGCGGGCT ACGGCTTTAA CAAATCCCAC
TCCGCTGCGT ACGCGCTCGT GTCCTATCAA ACCCTGTGGC TCAAGACTCA CTTCCCGTCG
CAGTTTATGG CGGCGGTAAT GTCTGCCGAT ATGGACAACA CAGACAAAAT CGTCACCCTA
GTGGATGAAT GTGAGCGCAT GGGACTCACC ATTATTCCGC CGGATGTGAA CAAAGGTCTG
TTTAAGTTTA CCGTCGATGA CGATCTACGC ATCGTTTACG GCATCGGTGC CATCAAAGGT
GTGGGTGAGG GGCCGGTTGA GTCCATTCTT GAGGCGCGTA AGGACGGCCC CTTTAAAGAT
TTATTCGACT TTTGCGCCCG TATCGATCTT AAAAAACTCA ACAAGCGGGT GATTGAAAAG
CTTATCTGTG CTGGCGCCTT AGATGCACTT GGGCCGCACC GCGCCTCTAT GATGGCCACC
TTGCCCGAGG CGATAAGCGC CGCCGATCAG CATGCTAAGG CCGAGGCCAT CGGCCAGCAT
GATATGTTTG GTCTGCTCAA TAGCGACCCT GAGGACAGTA AGCAACAGTT TGTCGAATGC
ACTCCGTGGC CCGATAAAAT TTGGCTCGAA GGGGAGCGCG AGACCTTAGG TCTATATTTA
ACCGGTCACC CGATTAATCA ATATCTTAAA GAGCTTAAGC ATTACACCTC TGGGCGCTTA
AAGGACGTGC ATCCAACCGA TCGCGGCAAA ACCGTGAAGG CGGCAGGCCT TGTGGTTGCA
ACCCGGGTGA TGCTCACTAA ACGTGGCTCG AAAATGGGCC TGTTGACGCT AGATGACAAG
AGTGCGCGCC TCGAGGTGAT GCTCTTTACC GAAGCCTTTG AGAAGTTTAA CTATCTGCTC
GAGAAGGACA GGATCCTGAT CTGCGAAGGT GAAGTCAGCT TCGATGATTT TGCCGGTGGC
AACCGCATGA CGGCGCGCAA TATTATCGAT ATCAGCGAGG CGCGCAGCCA CTTTGCCAGC
GCCTTAGAAA TCGATTTAGA CGCATCGCAG TTAAATCCAA GCGTGCTCGA AAGTATCGAG
CAATCGATAA GCCCGTGGCG CAACGGTGCC GTGCCCGTGG TGATTAACTA CAGTCAAGCG
CAGGCCAAGG GCCAATTTAG GTTGGCGGAA CATTGGCGAG TCAACCCCAG CGATGAATTG
GTGTTTGCCC TTGAGAGCCT CTTGGGGCCA AATAAGGTGC GGATCTTGTT CCCCTAA
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| Protein sequence | MSDPRFVHLR VHSDFSMSDG VAKVKPILAQ VEAKGMAAVA LTDQNNLCGL VKFYGGCHGA
GIKPIIGADF WMQVPGFDDE FCALTIIAMN NDGYQNLTQI ISQAYLRGHV AGRVVIDQEW
LVTYNEGILL LSGGKEGDVG KALLKGNNTQ VESLCEFYQQ HFEGRYYLEL LRTGRTDEER
YLHMAVGLAQ EKGIPVVATN QVVFLKPEDF EAHEIRVAIH DGFTLADPRR PKKYSEQQYL
RSEEEMCELF ADIPAALENT VEIAKRCNVT IRLYEYFLPN FPTGDMSIED YLVDCSKKGL
EERLEFLFPD PQVRAERRGE YDERLDVELK VINQMGFPGY FLIVMEFIQW GKDNGIPVGP
GRGSGAGSLV AYALKITDLD PLEFDLLFER FLNPERVSMP DFDVDFCMDR RDEVIDHVAE
LYGREAVSQI ITFGTMAAKA VIRDVGRVLG HPYGFVDRIS KLIPPEPGMT LAKAFEVEPA
LQESYDADED VKDLIDMCRK LEGVTRNAGK HAGGVVIAPT KITDFSPLYC DAEGKNPVTQ
FDKNDVETAG LVKFDFLGLR TLTIVDWALE MINKVEVKNG RPPVRIEAIP LDDPASFRLL
QRYETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP GPLQSGMVDN FIERKHGREE
VSYPDSQYQH ESLKELLSPT YGIILYQEQV MQIAQVLSGY TLGGADMLRR AMGKKKPEEM
AKQRGTFKEG AIKNGVDGEL AMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKTHFPS
QFMAAVMSAD MDNTDKIVTL VDECERMGLT IIPPDVNKGL FKFTVDDDLR IVYGIGAIKG
VGEGPVESIL EARKDGPFKD LFDFCARIDL KKLNKRVIEK LICAGALDAL GPHRASMMAT
LPEAISAADQ HAKAEAIGQH DMFGLLNSDP EDSKQQFVEC TPWPDKIWLE GERETLGLYL
TGHPINQYLK ELKHYTSGRL KDVHPTDRGK TVKAAGLVVA TRVMLTKRGS KMGLLTLDDK
SARLEVMLFT EAFEKFNYLL EKDRILICEG EVSFDDFAGG NRMTARNIID ISEARSHFAS
ALEIDLDASQ LNPSVLESIE QSISPWRNGA VPVVINYSQA QAKGQFRLAE HWRVNPSDEL
VFALESLLGP NKVRILFP
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