| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2560 |
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| Symbol | |
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| ID | 4253131 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3047441 |
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| End bp | 3049699 |
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| Gene Length | 2259 bp |
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| Protein Length | 752 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638119195 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_734688 |
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| Protein GI | 113970895 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4590] ABC-type uncharacterized transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAGTC AGGTCATTCA ACCTGGTTCT GCGCCGCAAA GTATGCTGAA AGGCGGACGT
TCAAGTCGCA GGGCATTTAA GGATAAAGCG GCTCAAATTG GGGTCACGAT TGGCGGCACT
ATGGTGTTTG TCGCCTTATT GTTGATCTTC TTCTATTTGC TGTACGTGAT TAAACCCATT
TTCGACAGCG CGGATGTGAC TCCCGTAAAA AGCGTGAGTT ATCAACATGC TGAAGTCGCG
ACTCTGATGG TCGGTGCCGA CGAGCAAAAT GAGGTTATGT ATCGCGTGGC CGCCGATGGC
CAAGTGGATT TCTACACTGT TGCCGATGGC AGTTTACTCT CCAGTTTTAC ACCGCCATTA
CCTGCGGGTG TGAGCGTAAC CAGCGCCGCG ATTGCCGCGC CGAGTGAGCA ACGCTTCGCA
CTGGGGTTAA GTAACGGTCA AGCCTTAATC GTAGGGATTG AGTTTGGCTT AAGTTACCCT
AACAACAAGC GCCTTATTAC CCCAAAACTG CGTTACAGCG CGGGTGAAGC GCCGATCACT
ATCGATGAAT CGGGCAGCGC TATCCATCAT TTAGCCTTTA GCTACAGCAA CGATAAAATC
AGCTTCGCCT ACCAAGATGA CAATGGTGCT TGGCGTTTAA GCCGTCTCGA AGGTCAAGAA
AACATGATGA CCGAAGAGGT GGAATGGACG ACCACGGGCG CACTACTGCC CGATGCACCT
AAAAAAGTTG CACACCAATT GATGACGCCG GATCAACGCC AATTGATGCT GCAAATGGGC
AACAAGGTGT TTATCTACAA TATCCGTGAT GTTGAGAGCC TGGATTTAAT GCAGGTGATT
GATGCGGAAA AGGAAAAGTC TAAGGTTAAC AACATTGCCT TACTTGCCGG TGCCAGCTCG
ATTCTGGTGA GCTACGACTC AGGTGTGGTA ACCCAGTACT TCCAAGTGAA TGGTCCAAAA
GGCCGTTTAT ACAAAGAGAT CCGTGAGTTT ACCGACTTAG CGCCAGTGGC CTCGATTGCC
TCTGAGTTCT ACCGTAAAAG TTTTGCCGTG GTGAGCCCAG AGGGTGAGTT ATCACTCCTG
TATACCACCA GTGAGCGCGA ACTGTTTGAT GAAAAGTTTG ACCTTAAAAA CCCAGGCGTG
ATGGGCTTTA GCCCACGTTC TAACGGCTTA GTGGTTGAAG CGAACAAGCA ACTGAATATC
TTCCACGTAG AAAACTCGCA CCCAGAAGTG TCTTGGAGCG CGCTGTGGAA TAAGGTGTGG
TACGAAGGTT ACCCTGAGCC TAAGTTTGTG TGGCAATCCA CCTCGGGTAG CGATGACTTT
GAAGCCAAAC TCAGCTTAAT GCCATTGGCC TACGGCACCA TGAAGGCGGC ATTCTACGCC
ATGCTGTTTG CCGTACCATT AGCGATTGCG GGCGCCATCT ATACTGCTTA CTTTATGTCG
CCAAAGGTGC GCGGCATCGT TAAGCCAACG ATTGAAATCA TGGAAGCCTT ACCGACGGTT
ATCTTAGGTT TCCTCGCCGG ACTTTGGTTA GCACCGCTGA TTGAAGAACA TCTACCGGGC
ATCCTAATAC TGCTGATCCT GCTGCCAACG GCGATTCTGG TGTCGGCGTA CTCTTGGAGC
AAATTACCCG GTACTTGGAA ACAACGTCTG CCTGAAGTCT ATCAAGAGCT GATGCTCATT
CCGGTTATCT GCTTTGTGGG TTGGTTCTCC TTTGCCATCA GCCCGATGAT CGAAGTGGCG
CTGTTTGATG GTAACACTCG TCAATTTATC ACTAACGAAT TAGGCATCAC CTTCGACCAA
CGTAACGCGC TGGTAGTGGG TATCGCCATG GGCTTTGCGG TTATTCCAAC GATTTTCTCG
ATTGCCGAAG ACGCGATTTT CTCTGTGCCA CGCCATTTAT CTAACGGCAG TTTGGCGCTG
GGCGCGACGC CTTGGCAAAC CCTGACACGT GTCGTGCTGT TGACCGCAAG TCCAGGGATT
TTCTCTGCGG TCATGATGGG TCTTGGCCGC GCTGTGGGTG AAACCATGAT CGTACTGATG
GCAACGGGTA ACACCGCCAT CATGGAATGG AGCGTATTTG AAGGTATGCG TACGCTGGCG
GCTAACATCG CGGTGGAAAT GCCAGAGTCG GCAATTGGCA GCTCGCACTA TCGAGTGCTG
TTCCTCGCGG CCTTCGTTCT GTTCGTATTT ACCTTCTTCT TTAACACGAT TGCCGAAGTG
GTAAGACAGC GTCTACGTGA CCGCTATAGC TCGCTGTAA
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| Protein sequence | MESQVIQPGS APQSMLKGGR SSRRAFKDKA AQIGVTIGGT MVFVALLLIF FYLLYVIKPI
FDSADVTPVK SVSYQHAEVA TLMVGADEQN EVMYRVAADG QVDFYTVADG SLLSSFTPPL
PAGVSVTSAA IAAPSEQRFA LGLSNGQALI VGIEFGLSYP NNKRLITPKL RYSAGEAPIT
IDESGSAIHH LAFSYSNDKI SFAYQDDNGA WRLSRLEGQE NMMTEEVEWT TTGALLPDAP
KKVAHQLMTP DQRQLMLQMG NKVFIYNIRD VESLDLMQVI DAEKEKSKVN NIALLAGASS
ILVSYDSGVV TQYFQVNGPK GRLYKEIREF TDLAPVASIA SEFYRKSFAV VSPEGELSLL
YTTSERELFD EKFDLKNPGV MGFSPRSNGL VVEANKQLNI FHVENSHPEV SWSALWNKVW
YEGYPEPKFV WQSTSGSDDF EAKLSLMPLA YGTMKAAFYA MLFAVPLAIA GAIYTAYFMS
PKVRGIVKPT IEIMEALPTV ILGFLAGLWL APLIEEHLPG ILILLILLPT AILVSAYSWS
KLPGTWKQRL PEVYQELMLI PVICFVGWFS FAISPMIEVA LFDGNTRQFI TNELGITFDQ
RNALVVGIAM GFAVIPTIFS IAEDAIFSVP RHLSNGSLAL GATPWQTLTR VVLLTASPGI
FSAVMMGLGR AVGETMIVLM ATGNTAIMEW SVFEGMRTLA ANIAVEMPES AIGSSHYRVL
FLAAFVLFVF TFFFNTIAEV VRQRLRDRYS SL
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