| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2555 |
|---|
| Symbol | |
|---|
| ID | 4253126 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3040916 |
|---|
| End bp | 3041893 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638119190 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_734683 |
|---|
| Protein GI | 113970890 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00750734 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGCC CTCGCAGAAT CCAAATCAGT CTTGAAGACA CTCCCTATTA TCACTGTTGT
AGCCGCGTGG TGCGCCGTGC ATTTTTATGT GGCGATGATG CCTATTCGGG GAAAAACTAT
GACCATCGCA GAGCTTGGGT TGAGTCATTA TTGTTTGAAC TTGAAGCGGT TTTTGCTATT
GATGTAGCTG CTTATGCTGT GATGCCCAAT CATCTGCATC TAGTGTTACG GGTCGATATT
GACAGTGCCA ATCGCTGGAG TGACCGCGAA GTGCTTGAAC AATGGCATAA GTTGTTTAAA
GGCGATGAAC TAACGCAAAA GTTCGCTAAA GGAGCATTGG TCGAGGCCCA TGAGGTCAAC
AGGTTAAAGC ATTCAATCGC CATTTACCGC AGTCGATTAT GTGATATTTC ATGGTTTATG
CGCTGCCTTA ATGAACCGAT AGCTAGGCAA GCAAATCAAG AAGATAACTG TACAGGTCGT
TTCTGGGAAG GTCGGTTTAA ATCCCAGGCC TTACTGGATG AAGCTGCGGT ATTAGCCTGT
ATGACTTATG TGGATTTAAA TCCTATCAGA GCCCAACTGG CTGATACGCC AGAACAATCC
GACCATACCA GCATTCAGCT ACGTATTCGG GCTGCATTAA AAGGTGAGCA GCCTAGCAAT
CTCCTGCCTT TTATTGGCAA CGAGCACGAT AACCAACCCA ATGGCATTGC GTTTTCCTTA
ACAGATTACC TCGAATTGGT GGATGATACG GGCCGAATTA TTCGTAATGA TAAACGTGGA
AGCATCAGTG AGAATAGCAC CAAGTTACTG ACTAGATTAA ATATCCCACA TGACAATTGG
CTCAAACTGA CCACCGAATT TGGCAAGCTA TTTCATGGTC CAGTGGGCAC ATTGCAAGCA
CTGACCGATT ACTGCGAACA TCTCGAAAAG CGACGACGGC ACTTTGCGGC AAGCTGCCAG
CACTTTCACA GCAACTAA
|
|---|
| Protein sequence | MPRPRRIQIS LEDTPYYHCC SRVVRRAFLC GDDAYSGKNY DHRRAWVESL LFELEAVFAI
DVAAYAVMPN HLHLVLRVDI DSANRWSDRE VLEQWHKLFK GDELTQKFAK GALVEAHEVN
RLKHSIAIYR SRLCDISWFM RCLNEPIARQ ANQEDNCTGR FWEGRFKSQA LLDEAAVLAC
MTYVDLNPIR AQLADTPEQS DHTSIQLRIR AALKGEQPSN LLPFIGNEHD NQPNGIAFSL
TDYLELVDDT GRIIRNDKRG SISENSTKLL TRLNIPHDNW LKLTTEFGKL FHGPVGTLQA
LTDYCEHLEK RRRHFAASCQ HFHSN
|
|---|
| |