| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2537 |
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| Symbol | |
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| ID | 4253108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3019708 |
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| End bp | 3022563 |
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| Gene Length | 2856 bp |
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| Protein Length | 951 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638119172 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_734665 |
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| Protein GI | 113970872 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTCT TAACCACCAA GCCTGCCGCG ATTGCCCTAG CCATCGCAGC GGCTCTGACA
GCAACTCACA GCGCTGCCAA TGAAATACCA GCAGAGCAAC AAACCGAAAC GAAAGAGCAA
GTTCAACCGA AGGACACTGC GCAAACCCAG GATGCTGAAG TCGAACGCAT TCAGGTAACA
GGGATCAGAA ACAGTATTAA GGAAGGGATG TTCCTAAAGC AGAATGCCGT GAGCGTAGTC
GACCTTGTGG TCGCCGATGA CATTGGTAAA TTTCCAGATG AAAACTTAGC CGAGGCGCTA
CAGCGCATTC CTGGGGTGAC CATTACCCGT AACGGCGGCG AAGGACAAAA TATTCTGGTT
CGCGGCCTTG GCGATGGTTA TAACGTCACC ACCCTCAATG GCCGTAAATT GGCCTCAGAA
AATGCAGGCC GAGACTTTAA CTTCGACACC ATCGCCTCGG AGCTGGTAAA CGTGCTGGCG
GTGTATAAAT CACCCGAAGC CAGACTGACC GAAGGTGGCA TTGGCGCTAT CGTCGATATC
CAAACCCGTA AACCGCTGGA TTTAGAAGGC CGTACCATTC AAGCCTCCGC CAAGGGGATT
TACGAGTCCC GTACCGAGGA TATTCACCCC CACGCCTCAC TGATCATCGG TGATAAGACG
GATGACGATA GTTTTGGTGC GCTGGTCTCG GCGGTATATT CCCGTAAAAC CCTGCGGGCA
GACACCTATT CGGCCGAAGG CTTCTTCGAT GAAGATGAAG GCTGGGGCGT CGACAGCGCC
GGGGTGCCGG TCGATACCAA CAATAACGGC GTGATCGACC CAGGTGAGAT TTATGCCTCT
AAGATCCCAA GCTATATGTA TTTTGCGAAC GCCCAAGACG TGCGTGAACG CGTAGGTGGC
ACGCTCGCTC TGCAATGGCG CCCATTGGAT AATCTCGACA TTAACTTCGA CGGTCTCTAT
TCACGCTACA ACACCGATGG CCATAAATAC CAAATCGGCT TCGTGAACTA CGACGAAGAA
TGGACGCCGG GCACACCGCT ATTTACCGAC GCCATATTTG ACGATCAGGG CCGTGTGGTG
AGCATGAACC AAACGGGTGA CAACACTATG GTTGAATTGC TCAACCTCAG TACCCCAAGA
AAAACCGATA CCTACCAAAT GGGTCTGAAG GCCGACTGGT ATGTTATGCC CAATTGGTCG
ATTACCGCCG ATGTCGCCTA CTCCGCCGCG CAAAATGCCA ATAATGGCGA TAACCGCTTC
GTGGTTGCCC GTGGCTTTGT CGATGGCATC GACATCGATT ACACCCGTGG CAATATGCTG
CCCGATGTGG TGATTAGCCC AGGTCTGAGT GCCGATCAAA AATACGGCGC CCACTACAGC
CGTAACAGTG GCGTCGATGT GGACGATAAA ATTACCGACA TCAAACTGAA CAGCCAATAC
ATTCCCGATG AAGGCATCAT CAGCAAGGTC GATTTTGGCG TCAATTATGT CAAGCAAGTG
AAAAAGCAGA CCGAATTTGC CTCATCCAAT TCCAGCCAAT TTAGCCGTGG TGGTTATTAC
CTGACACGCG ATGGTTATAC CTTCGATAAC AGCACTGTCT TTACTCAGGG CGAATTTGAA
CTGTTCCAAA TTCCTTCGAG CGTATTTGTG CCCGCCAACT TCGATAACTT CCTCGATGGT
GAAAACAGCA TCTCCCCAGA GCCTTGGCCA AGCTTCGACT ATGACAAACT GCTTGAATAC
TACCGCAGCA TTAACCAAGA AGCGGCGGAT AAGAGCATTG TCGCTAGCCT CAATAAGGCT
GGCAGCTATG AAGTCACAGA AGCAGTGACC TCCGCCTATG TGCAGGTGAA TATTGAAGAG
GAAATTTTCG ATCTGCCGTA TATGTTGAAC TTAGGCCTCA GAGCGAGCCA GACTAAAGTC
ACCTCCGACG GTTATGCCTA CGATTTGGCT AAGGTTGAGT TAGACAGTGC CGGCCAACCC
ACCAACAATG ATTGGAAAAA CGTTGTTCAA ACCAGTTACG ACGATAGCTA TACCAATGTG
TTACCGAGCA TGAACTTTAA GCTCAATCTG CAGGATGATT TGCTGCTACG AGTCTCCGCC
GCTGAAGTGT TAAGCCGCCC ATCACTCTAT GCGCTGCGAG TGTGGGCTGC ACCGAGTTTC
ACGACCCGTG AGAATGGCTT ACCGACATTG ACACGCGGTA ACCCAAGCGT CGCCCCCGAA
AAGGCGCGCC AAGGAGATAT CTCCCTCGAA TGGTATTTCC ACGAGAGTAG CTCACTGAGC
GGTGCCATTT TTATCAAAGA CATTGAATCC TTTATCACCG ACGACAAAGG GCCTCAAATG
GTTGAGGGGA CAGAATATTA TGTTACTCAG CCCGTATCGG GTAAGTACGG CGCCAAAGTG
CAAGGGGTGG AAGCCGCATG GCAGCAATCC CTCGACGAAT ACCTGCCAGA ACCCTTTAAT
GGTTTAGGTT TCCAGCTGAA CTACACCTAT GTGGACAGCA GCTATGATGA TCCCGAAATC
GATGCGAAAG GCTTACCCTT TAAGGGCATG TCGAAAAACT CTTACAACGC CGTCCTTTAC
TATGAGCAAT ACGGTCTGCA GGCCAGGGTT GCCTATAACT GGCGCAGTAA GTTCCTGGTC
GATCCCGAAG CTTGGGGTGG TCCAGCTTGG ATCCAAGATT ACGGTCAGCT CGATGCTAGC
GCGAGTTATG ACATTTTTGA AAATGTGTCG ATTTTCGCCG AGGCTTCTAA CCTGACCAAT
AACCGCTATT CGGGTTATGT GAAGTATGAG GACCAAGTGA ATTACCTAGA ACGTTTTGGC
ACCCAAATCG CCCTCGGGAT CCGCGGCAGT TTCTAA
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| Protein sequence | MKLLTTKPAA IALAIAAALT ATHSAANEIP AEQQTETKEQ VQPKDTAQTQ DAEVERIQVT
GIRNSIKEGM FLKQNAVSVV DLVVADDIGK FPDENLAEAL QRIPGVTITR NGGEGQNILV
RGLGDGYNVT TLNGRKLASE NAGRDFNFDT IASELVNVLA VYKSPEARLT EGGIGAIVDI
QTRKPLDLEG RTIQASAKGI YESRTEDIHP HASLIIGDKT DDDSFGALVS AVYSRKTLRA
DTYSAEGFFD EDEGWGVDSA GVPVDTNNNG VIDPGEIYAS KIPSYMYFAN AQDVRERVGG
TLALQWRPLD NLDINFDGLY SRYNTDGHKY QIGFVNYDEE WTPGTPLFTD AIFDDQGRVV
SMNQTGDNTM VELLNLSTPR KTDTYQMGLK ADWYVMPNWS ITADVAYSAA QNANNGDNRF
VVARGFVDGI DIDYTRGNML PDVVISPGLS ADQKYGAHYS RNSGVDVDDK ITDIKLNSQY
IPDEGIISKV DFGVNYVKQV KKQTEFASSN SSQFSRGGYY LTRDGYTFDN STVFTQGEFE
LFQIPSSVFV PANFDNFLDG ENSISPEPWP SFDYDKLLEY YRSINQEAAD KSIVASLNKA
GSYEVTEAVT SAYVQVNIEE EIFDLPYMLN LGLRASQTKV TSDGYAYDLA KVELDSAGQP
TNNDWKNVVQ TSYDDSYTNV LPSMNFKLNL QDDLLLRVSA AEVLSRPSLY ALRVWAAPSF
TTRENGLPTL TRGNPSVAPE KARQGDISLE WYFHESSSLS GAIFIKDIES FITDDKGPQM
VEGTEYYVTQ PVSGKYGAKV QGVEAAWQQS LDEYLPEPFN GLGFQLNYTY VDSSYDDPEI
DAKGLPFKGM SKNSYNAVLY YEQYGLQARV AYNWRSKFLV DPEAWGGPAW IQDYGQLDAS
ASYDIFENVS IFAEASNLTN NRYSGYVKYE DQVNYLERFG TQIALGIRGS F
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