| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2494 |
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| Symbol | clpX |
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| ID | 4253065 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2963993 |
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| End bp | 2965273 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638119126 |
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| Product | ATP-dependent protease ATP-binding subunit ClpX |
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| Protein accession | YP_734622 |
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| Protein GI | 113970829 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
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| TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000301553 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0380968 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGACA ACAAAAATAA TGGTGACAGC GGTAAATTGC TGTACTGCTC TTTTTGCGGT
AAGAGCCAGC ATGAAGTCAG AAAACTGATT GCAGGCCCAT CAGTATACGT ATGCGACGAA
TGTGTTGAAT TATGCAACGA CATCATTCGT GAAGAGATTA AAGAAATCTC CCCTAAGCGT
GATAATGATA AATTGCCAAC GCCACATGAG TTGCGTGCGC ATTTAGACGA TTATGTGATT
GGTCAGGACA GAGCCAAGAA AGTGCTGTCT GTCGCTGTAT ACAATCACTA TAAACGTCTG
AGAAATTCTT CTCCTAAAGA TGGCGTGGAA TTAGGCAAGA GTAACATTCT GCTGATTGGT
CCAACGGGCA GTGGTAAGAC GCTGCTGGCT GAAACACTCG CGCGCTCATT GAATGTCCCA
TTTACTATGG CTGACGCCAC TACCTTAACC GAAGCGGGTT ATGTGGGTGA AGACGTTGAA
AACATCATTC AAAAGCTGCT GCAAAAGTGC GATTACGATG TTGAAAAGGC ACAGCGCGGT
ATCGTCTATA TCGACGAAAT CGACAAGATC AGCCGTAAAT CGGATAACCC ATCGATTACC
CGTGACGTAT CGGGTGAAGG CGTGCAGCAA GCGCTGCTGA AACTTATCGA AGGTACGGTT
GCCGCGGTTC CGCCTCAAGG CGGTCGTAAG CATCCACAGC AAGAGTTCTT ACAGGTAGAT
ACCTCTAAGA TCCTGTTTAT CTGTGGTGGT GCTTTTGCTG GCCTTGAAAA GGTGATTGAA
CAGCGTGCTC ACGTAGGTTC AGGTATCGGT TTCGGTGCGC AGGTTAAGGG CGAGAAAGAT
AAGGCAACGA TTTCGCAAAC CTTATCTCAA GTCGAACCCG AAGATTTAGT CAAATATGGC
TTGATCCCTG AGTTTATCGG TCGTCTGCCC GTTGTAGCGA CGCTGACCGA GCTGGACGAA
GAGGCCCTAG TGCAAATTCT GTCTGAGCCC AAAAACGCGC TGACTAAGCA ATACAACGCG
CTGTTTGAGA TGGAAGGGGT TGAGCTAGAG TTCCGCGAAG ATGCGCTCAA AGCGATTGCA
CATAAAGCCA TGTCGCGCAA AACCGGTGCC CGTGGTCTAC GTTCAATCGT AGAAGGTATC
TTACTCGATA CTATGTACGA CATTCCTTCA ATTGAGGGCG TTGTGAAGGC GGTTGTTGAT
GAATCTGTGG TGAATGGTGA ATCTGCACCT ATCCTGATTT ACGAGCGTAA CGACGCGCAA
GCGGCCTCTG GCGAGCAATA A
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| Protein sequence | MGDNKNNGDS GKLLYCSFCG KSQHEVRKLI AGPSVYVCDE CVELCNDIIR EEIKEISPKR
DNDKLPTPHE LRAHLDDYVI GQDRAKKVLS VAVYNHYKRL RNSSPKDGVE LGKSNILLIG
PTGSGKTLLA ETLARSLNVP FTMADATTLT EAGYVGEDVE NIIQKLLQKC DYDVEKAQRG
IVYIDEIDKI SRKSDNPSIT RDVSGEGVQQ ALLKLIEGTV AAVPPQGGRK HPQQEFLQVD
TSKILFICGG AFAGLEKVIE QRAHVGSGIG FGAQVKGEKD KATISQTLSQ VEPEDLVKYG
LIPEFIGRLP VVATLTELDE EALVQILSEP KNALTKQYNA LFEMEGVELE FREDALKAIA
HKAMSRKTGA RGLRSIVEGI LLDTMYDIPS IEGVVKAVVD ESVVNGESAP ILIYERNDAQ
AASGEQ
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