| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2465 |
|---|
| Symbol | |
|---|
| ID | 4253036 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2928335 |
|---|
| End bp | 2929549 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638119097 |
|---|
| Product | IS4 family transposase |
|---|
| Protein accession | YP_734593 |
|---|
| Protein GI | 113970800 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000609587 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000155014 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGCAAGTGT TAACTACCTT ACATCAATCT CTCTATCAAC ATTGTCCAGA AATCCATCAA
AAGCGACTGA ATACACTCAT GGTCGCCTGC AAAGCCCTCA TCAATGCGGA TTGTCTCACC
CTAACCCATT TAGGGCGGCA CATTGATGGC TCCAGCACTC ATACAAAACA CTCAATAAAA
CGCATGGATA GATTATTGGG CAACCTGCAC CTTCACCATG AAAGACTGGC GATTTATCAG
TGGCATGCAA AGTGGCTGCT GACTACTCAT ACTATGCCGA CCATACTAGT GGATTGGTCA
GATATGCGTG AAGGTCGTGA GCTGATTGCA CTACGCGCCT CTATTGCTAT CAAAGGCCGC
TCTATCACGC TCTACGAGCG AACATTTCCG TTAATCCTGC AAGGCACTCA AACTGCGCAT
AATCAGTTTC TGAATGAACT CAGACAAGTG TTACCTGATA ACATTACCCC GCTGATAGTC
ACTGACGCGG GCTTCCGTAA TCCATGGTTT CGCAAAGTCG AGCAGCTCGG TTGGTATTGG
CTGGGTCGTG TCAGAGGATT AAGTGTCTAT CGGCCGCATC CTTCTGGTCG CCAATTTTCA
CTAAAAGCGC TTTATCCCAA AGCCAGTTGT CGTGCAAAAC ATGTTGGACG GGTGGCGTTA
TCGGTAAAGA AACCCTTGTT ATGCGAGATG GTGTTGTTCA GAGCCCCAAG TAAAGGCAGA
AAAGGTCAGC GAAGTACGAC AACTGACTGT CACCATACGG CGCAATGGAC GTATGAACTG
ACAGCCAAAG AGCCTTGGGC ACTGGTGACC AACTTGACCA TAGAAGCCAT GTCGCCTCAA
AAACTGGTTA ATATTTACCA AAAACGGATG CAAATAAAAG AAACCTTTAG AGATTTAAAA
AGCCCCGCTT ATGGCTTTGG TTTACGTCAT AGCAGCACAC GTTATGCGGC GAGGATGGAC
ATACTGCTAT TGATAGCATT ATTGGTGCAA CTGGCATTTT GGTGGGTAGG ATTATACGGA
GAAACACAGC AACTACAGCG GCACTTCCAA GCCAACACGG TAAAGAAAAG GAATGTGCTA
TCAACAATCA GGATGGGCAA AGAACTGCTG CGGCGACGAC ATGACTACCC CATATCAGCA
GATGATTTAC TTTGTGCTGC GAAGAAACTA GCCCAACTCT CATTGACTCA TGGTTGTTGG
GGCTATGAAT TATGA
|
|---|
| Protein sequence | MQVLTTLHQS LYQHCPEIHQ KRLNTLMVAC KALINADCLT LTHLGRHIDG SSTHTKHSIK
RMDRLLGNLH LHHERLAIYQ WHAKWLLTTH TMPTILVDWS DMREGRELIA LRASIAIKGR
SITLYERTFP LILQGTQTAH NQFLNELRQV LPDNITPLIV TDAGFRNPWF RKVEQLGWYW
LGRVRGLSVY RPHPSGRQFS LKALYPKASC RAKHVGRVAL SVKKPLLCEM VLFRAPSKGR
KGQRSTTTDC HHTAQWTYEL TAKEPWALVT NLTIEAMSPQ KLVNIYQKRM QIKETFRDLK
SPAYGFGLRH SSTRYAARMD ILLLIALLVQ LAFWWVGLYG ETQQLQRHFQ ANTVKKRNVL
STIRMGKELL RRRHDYPISA DDLLCAAKKL AQLSLTHGCW GYEL
|
|---|
| |