| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2452 |
|---|
| Symbol | |
|---|
| ID | 4253023 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2917332 |
|---|
| End bp | 2918294 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638119084 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_734580 |
|---|
| Protein GI | 113970787 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000000228881 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | GTGAGCAAAG TTCACACTAA ATACCCTTAT CAATTACTCG ATTCGGATAC GCCTATGTTT
ACTTCCTTGC CGCCCCTCAA TGCATTACGG GCTTTCGAGT CTGCCGCCCG CTTGCAAAGC
ATGACTCTTG CCAGCAAAGA ACTGCATGTC ACCCACGGCG CCATCAGTAA ACAAATCCGT
GTACTAGAAG AATTCTTAGG TTTTGCCCTC TTCGTGCGCC TGCATAAAAA AGTCGCACTC
ACGGACGAAG CCAAGCGCTA CTTGCCCCAT GTGCAAGCGG CTCTGCAAAC TTTGTCCAGT
GCCACCGCCG ATTTACGTAG TCAAGGCTCG CGGCCACAAA CTTTAGCGAT CAATGTGTTA
CCCAGTTTAA CCATCAACTG GTTAATCCCC CGGATGGAGC AATTTAAATC TCGGCATCCG
CATGTGTATG TGGATCTTTC GATTGGTGAC TTCGCCGTCG ATTTCAGCCA AGGCCGTTAC
GACATCGCCA TTCGTAGCAG CACTCAACTC CCCAGAGGGG TTAACTACAT CAAACTGATG
GATGAAGACT TGTGCTTAGT GTGCGCGCCG TCACTCGCGC CTAAGCTCAA AAGTATCGAA
GACATCAATC AGGTCACCCT GCTGAAACAC ACCACACGGC CAGAGCTTTG GGAATATTGG
GCAGATAAAG TGGGACTGGT ACTCACGCAG GCGCAAACCT TTGGCGTCGA GCATTTTTAT
ATGTTGAGTC AAGCCGCAGC CAGTGGCATG GGCGCTGCGC TGATCCCACG TTTTTTTATC
GAAGATCAAT TGGCCAATGG CAGCTTAGTG ATCCCGTTTC AAGCGCCTTT TACCAGCCCA
TACGCCTATT ACTTACTCAC GCCCAAATCC CCTAGCTTAC CGCTAAAGGT GCAAGCCTTT
ATCGATTGGA TGCTCGAGTT ATTTGCCCCA TATCGGCAAT CGTCAGATAT CGACAAAGCT
TAG
|
|---|
| Protein sequence | MSKVHTKYPY QLLDSDTPMF TSLPPLNALR AFESAARLQS MTLASKELHV THGAISKQIR
VLEEFLGFAL FVRLHKKVAL TDEAKRYLPH VQAALQTLSS ATADLRSQGS RPQTLAINVL
PSLTINWLIP RMEQFKSRHP HVYVDLSIGD FAVDFSQGRY DIAIRSSTQL PRGVNYIKLM
DEDLCLVCAP SLAPKLKSIE DINQVTLLKH TTRPELWEYW ADKVGLVLTQ AQTFGVEHFY
MLSQAAASGM GAALIPRFFI EDQLANGSLV IPFQAPFTSP YAYYLLTPKS PSLPLKVQAF
IDWMLELFAP YRQSSDIDKA
|
|---|
| |