| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2450 |
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| Symbol | |
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| ID | 4253021 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2914990 |
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| End bp | 2916192 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638119082 |
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| Product | exodeoxyribonuclease I subunit D |
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| Protein accession | YP_734578 |
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| Protein GI | 113970785 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0420] DNA repair exonuclease |
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| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.982137 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000023362 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAGATTTA TCCATACCTC GGACTGGCAC ATTGGTCGCC AGTTACATAA TCAATCACTC
TTAGAAGACC AAGCCTATGT GCTTGATCAA ATCGTGACAT TGGCTGAGCA GCACACTGTC
GATGCGGTGA TTATTGCCGG GGATATTTAC GATAGGTCGA TTCCTCCTGC CAGCGCCGTG
GCTTTGCTCG ATGAGGTGCT TAATCGCCTC ATCACAGAGT TAGGATTACA AGTGCTGATG
ATTGCCGGTA ACCACGACGG GCACGAACGC TTAGGCTTTG CGGCTAAACA AATGGCGGCA
AGTGGCTTGC ACATTATTGG GCCGCTTCAG GCTGATTTAA CGCCGATCCG CTTAACCAGC
TCAAGTGGCG ATGCTTACTT TTATCCGCTG CCTTACGCCG AACCTGCAAC CGTGCGCCAA
GTATTTGAGG CGGATGCTAA GGGGCTCAGC GTGTCCAGCC ATGAAGAGGC TATGGCGCTA
CTGCTAGAAC AAGTCCGCAG CCACGACAGC CAAGGGTTAC CTAAGGTCGT TGTTAGTCAT
TGCTTTTTAG ATGGTGGCAG TGAGTCCGAG TCCGAGCGGC CATTGAGTAT TGGTGGCGCC
GATAAAATTT CCCCACGGCT TTTTAGTGAG TTTGACTATG TCGCCCTCGG CCACTTACAC
GGACCGCAAT ATAAAGGCAG TGAACATGTA CGTTATTCTG GCTCGATTTT GAAATACTCC
TTTAGCGAAC AGCATCAACA TAAGTCTGTC ACCTTAGTCG ATGTCGCGGC GCACACTCCG
GCGCAGATCC AACTCTTGCC CTTAACTGCG CTGCGCGATG TGCGGATTAT CGAAGGAGAA
TTGGCGCATT TATTAGATCT TGGGAAGACC GATGCCAAGC GTGAGGATTA TCTGATGGTT
AGACTCCTTG ATAAGCACGC CATTTTAGAT GCCATGGGCA AATTGCGCAG TGTCTATCCC
AATGTGCTGC ATCTAGAACG TACTGGATTA ATGGCGGGCG AACAGGCCGT CGCACTCAAT
CGTGACCATA TCAAAAAAGG CGAAATGGCC ATGTTCCGTG ATTTTTTCAG TCAGGTTTCT
GGCGAGGAAT TGAGTGATGC GCAGCAAGCG GTTATGGATG AGATTTTAAC TAAGCTTCAC
AGGGATGAAG GCGATAGCGG TGAATCTACT CGCGTTGCAG CAAAAGGGGA GCAATCCGCA
TGA
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| Protein sequence | MRFIHTSDWH IGRQLHNQSL LEDQAYVLDQ IVTLAEQHTV DAVIIAGDIY DRSIPPASAV
ALLDEVLNRL ITELGLQVLM IAGNHDGHER LGFAAKQMAA SGLHIIGPLQ ADLTPIRLTS
SSGDAYFYPL PYAEPATVRQ VFEADAKGLS VSSHEEAMAL LLEQVRSHDS QGLPKVVVSH
CFLDGGSESE SERPLSIGGA DKISPRLFSE FDYVALGHLH GPQYKGSEHV RYSGSILKYS
FSEQHQHKSV TLVDVAAHTP AQIQLLPLTA LRDVRIIEGE LAHLLDLGKT DAKREDYLMV
RLLDKHAILD AMGKLRSVYP NVLHLERTGL MAGEQAVALN RDHIKKGEMA MFRDFFSQVS
GEELSDAQQA VMDEILTKLH RDEGDSGEST RVAAKGEQSA
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