| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2444 |
|---|
| Symbol | |
|---|
| ID | 4253015 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2906983 |
|---|
| End bp | 2908332 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638119076 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_734572 |
|---|
| Protein GI | 113970779 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000000483539 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGCAGTTTA CTGATTTTTC TCTGGACCAG CGTCTGTTAC AAAGCTTAAA GCATATGGGG
ATTGCAACCC CAACCGCCAT CCAGGAACAA GCACTGCCTA TCGCATTGGC AGGTAAAGAT
TTAATGGCAT CATCAAAGAC TGGGTCAGGT AAGACCTTAG CGTTTTTGTT GCCAGCATTG
CAAAGGGTTA TCTCCACCCG CGCTTTAAGT AAGCGCGATC CTAGAGTACT GATTTTATTA
CCTACCCGTG AATTAGCCCA TCAGGTGTAT AGTCAGTTAC GTTTACTGGT GGCGAACACC
CAATACAAAG CCATTAGCGT ATTAGGCGGT GAAAACTTTA ACGATCAAGC CAAAGCACTG
GCAAAAGAGC CACATTTTAT CGTGGCAACG CCGGGACGCA TCGCCGATCA TTTAGAGCAA
AAAAACCTCT TCCTCAATGG ATTAGAACTG CTTGTCCTCG ATGAAGCAGA CCGTATGCTG
GATCTGGGTT TTGCGCCGCA ATTAAAAGCC ATTAACGCTG CTGCCGATCA TAAGCGCCGT
CAAACCTTAA TGTTTTCGGC CACCTTAGAT CACAGTGAAA TCAATGAGAT TGCGGCAGCA
TTACTTAAAA ATCCGTCGCA TGTTGCGATT GGCGCAGCCC ACACTGAGCA TCAGGATATT
ACCCAGCGTA TTTATCTGTG CGATCACTTA GATCACAAAG AAGCCCTGCT CACACGTCTG
CTTAGCGATG AAACTCACAA GCAAGTGATT ATTTTTACCG CCACCCGCGC CGACACCGAG
CGCTTAGCGA GCAAACTCTC GGCGCAGGGT TTTGCCACAG CCGCCTTAAG TGGTGAGCTT
AAACAAGCGG CACGTAATCA GATCATGGAT CAATTTGCCC GTGGCCAGCA GCAAATTCTG
GTGACTACAG ATGTGGCATC CAGAGGCTTA GACTTACTCA ATGTCTCCTT AGTCATTAAC
TTCGATATGC CCAAATTTGC CGAAGAATAT GTCCATCGCA TAGGTCGTAC TGGACGCGCA
GGCGCCAAAG GTGATGCAAT CTCCCTCGTT GGTCCTAAGG ATTGGGATAA CTTTAAGAAA
GTACAACTCT TCCTGAGAAA GACCTTTGAG ATCAGCGTGA TTAAGGGGCT CGAAGCTAAA
TTTAGTGGTT TAAAAGACAA GCCTAAAGCC GCCGCAGCTA AAGCGGTAAC CAAGGCAGGA
ACAAAAACCA AAGCGAACGC CAAGTCAAAA ACCGTTAAAG CAGCTCCCTC AAGGGATAAA
CGCTTTATCA CTGGGGTTGA TGTGGGTGAT GCGCCAATGC GTAAAAAACC TGCGGCGCCA
TTGCTGCAGG ATCATGACGA CGAGCGTTAA
|
|---|
| Protein sequence | MQFTDFSLDQ RLLQSLKHMG IATPTAIQEQ ALPIALAGKD LMASSKTGSG KTLAFLLPAL
QRVISTRALS KRDPRVLILL PTRELAHQVY SQLRLLVANT QYKAISVLGG ENFNDQAKAL
AKEPHFIVAT PGRIADHLEQ KNLFLNGLEL LVLDEADRML DLGFAPQLKA INAAADHKRR
QTLMFSATLD HSEINEIAAA LLKNPSHVAI GAAHTEHQDI TQRIYLCDHL DHKEALLTRL
LSDETHKQVI IFTATRADTE RLASKLSAQG FATAALSGEL KQAARNQIMD QFARGQQQIL
VTTDVASRGL DLLNVSLVIN FDMPKFAEEY VHRIGRTGRA GAKGDAISLV GPKDWDNFKK
VQLFLRKTFE ISVIKGLEAK FSGLKDKPKA AAAKAVTKAG TKTKANAKSK TVKAAPSRDK
RFITGVDVGD APMRKKPAAP LLQDHDDER
|
|---|
| |