| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2422 |
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| Symbol | |
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| ID | 4252993 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2883871 |
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| End bp | 2885676 |
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| Gene Length | 1806 bp |
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| Protein Length | 601 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638119054 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_734550 |
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| Protein GI | 113970757 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.81174 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCAT CTCCTAAAGA CGAAATGTGG ACAGTTTTCA AACGATTACT GGGCTATCTC
AAACCGATGA AGGGCATGTT TTTGCTTTCA GTTTGCGGCC TGATTGTATA TGGGCTTGTT
GACGCAGCCT TTATTTCCTT TATTGGTCCT TTTATCGATA AAGGCTTTTC CAGCAGTACA
CCAGCGATCA GTAACGGTAT TGCACTCCCC ACTAGCCAAG GCTTTCATGC CGACAATCAG
GTGCTATTAA TGGCGCCGAT AGTGGTTATT TTAATGTTCT CCTTACGTGG CTTTGCAAAC
TTCGTGTCCA CCTATGGTAT CTCCTACATG AGTGCCCGTT TGATCATGGA TATGCGCCAA
CAAGTGTTTG AACATTATCT GAGCTTGCCC GTGAGCTACA TGGATAAGGA AAACACCGGT
AATCTGATTT CAAAAGTCAC CTTTGACACC GAACAAATTG CCCGAGCATC AGGCAGCGCC
TTGATTTCAA TCGTGCGTGA CGGTGTAACT GTTATCGGTA TGTTGGGGTT GATGTTTTAT
AACTCTTGGA AACTTTCCCT CTGTATCTTA GTGATTGGTC CGATTATGGG GCTAGTGATC
ACTATTGTGA GTCGTCGTTT CCGAAAGGTG TCAAAACAAA TTCAAACGGC GATGGGCGAT
GTCAGTGCGG CAACCGAGCA GATGATCAAA GGCCATAAAA ACGTGTTGGC CTTCGGTGGA
CAAGAAACCG AAACGGCTCG CTTTGCCAAA ATTAATGACA GAAACCGTCA TCAAAATATG
AAGCTTGCGG TCGCGCAAGC GGTTAGCCAG CCGCTTATTA TGGTGATTGG CTCCTTTGCC
TTGGCTTTTG TACTCTATGC GGCGAGCCTC GATAGCATGA AAGCCGATCT GACCGCGGGT
ACCTTCGCGA CTATTCTCGG TGCCATGATG GCAATGCTAC AACCCATCAA AAACCTCACC
CGAGTAAATG CCGAATTTCA GCGCGGTATT GCGGCCTGTA CCACGGTTTT TGAATTGTTA
GACACTCTGC CAGAGTCCGA TACCGGAACC TATACTGTCA AGCGCGCTAA GGGTAACTTA
CGTTTCGATA ATGTCTCTTT CAGTTACGAA GGGCAGGAGC GTCGCGCCTT AGATAAAATC
GATTTTGAAG TCACTCAAGG TCAAACCTTA GCCTTGGTTG GGCGTTCTGG CTCGGGTAAA
TCTACGATCG CCAGTCTAGT TACGCGTTTT TACACAGGCT TAGAATCTGG TGATATCAAG
CTTGATGATG TGAGTATTTA TGATTACTCA TTGAAATCAT TACGTAGTCA AGTGGCTTTA
GTTTCGCAGC AGGTAACACT GTTTAACGAT ACCATTGCCA ACAACATCGC CTATGCTTAT
CCCGGTGAAG CGACCCGAGA GCAGATTATT CAGGCGGCAA CCTTGGCCCA TGCGATGGAA
TTTATCGAGC AATTGCCCGA GGGGTTAGAT ACACAAGTGG GCGAAAACGG GGTGTTATTA
TCGGGCGGCC AGAGACAACG TATCGCGATT GCCCGCGCTA TGCTGCGTGA TGCGCCAGTG
CTGATCCTCG ATGAGGCCAC TTCGGCACTC GATACCGAAT CTGAAAAGGC CATTCAGCAG
GGTCTAGACA ATTTACGCCA GAATCGTACT TCTGTTGTGA TTGCCCACCG CTTATCTACC
ATTGAAAGTG CCGATCAAAT TTTAGTGGTA GATCAAGGCC GTATCGTTGA GCGGGGTACC
CATAAATCCC TGCTGGAACT TGGCGGTATG TATGCCAAGT TATACCAAAT GCAGTTTGGT
AGCTAA
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| Protein sequence | MTASPKDEMW TVFKRLLGYL KPMKGMFLLS VCGLIVYGLV DAAFISFIGP FIDKGFSSST
PAISNGIALP TSQGFHADNQ VLLMAPIVVI LMFSLRGFAN FVSTYGISYM SARLIMDMRQ
QVFEHYLSLP VSYMDKENTG NLISKVTFDT EQIARASGSA LISIVRDGVT VIGMLGLMFY
NSWKLSLCIL VIGPIMGLVI TIVSRRFRKV SKQIQTAMGD VSAATEQMIK GHKNVLAFGG
QETETARFAK INDRNRHQNM KLAVAQAVSQ PLIMVIGSFA LAFVLYAASL DSMKADLTAG
TFATILGAMM AMLQPIKNLT RVNAEFQRGI AACTTVFELL DTLPESDTGT YTVKRAKGNL
RFDNVSFSYE GQERRALDKI DFEVTQGQTL ALVGRSGSGK STIASLVTRF YTGLESGDIK
LDDVSIYDYS LKSLRSQVAL VSQQVTLFND TIANNIAYAY PGEATREQII QAATLAHAME
FIEQLPEGLD TQVGENGVLL SGGQRQRIAI ARAMLRDAPV LILDEATSAL DTESEKAIQQ
GLDNLRQNRT SVVIAHRLST IESADQILVV DQGRIVERGT HKSLLELGGM YAKLYQMQFG
S
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