| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2404 |
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| Symbol | |
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| ID | 4252975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2863104 |
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| End bp | 2864093 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638119036 |
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| Product | ribosomal large subunit pseudouridine synthase C |
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| Protein accession | YP_734532 |
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| Protein GI | 113970739 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000151583 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGTCG TTATAAGTAG ATGGCACATC ATGAATACAG AATCTCCACA GCTACAGGTG
CAGTTGATCA CGATTGACGA AGACCACCTC GACCAACGAA TCGACAATTT TTTAATCACA
GTGCTAAAGG GTGTTCCTAA GAGCATGATT TACCGTATCG TCCGTAAGGG CGAAGTACGG
GTGAATAAAA AACGCATTAA GCCAGAGTAC AAATTACAAA TCGGTGATGT GGTACGCGTG
CCTCCCGTCA GAATGGCTGA GCAGGATAAT CGTACTGCGC CTTCTGCTAA TCTGAGCAAA
GTGTCTCAGC TTGAAGACCG AATTTTGCAC GAAGACAATC ATCTGATTGT TTTGAATAAG
CCTGCTGGCA TTGCGGTACA TGGTGGCAGT GGCGTCGATT ATGGTGTGAT TGAAGCGCTG
CGCTCCTTAC GTCCACAACA GAAATTTTTA GAACTGGTTC ACCGTCTCGA TAAAGACACT
TCGGGCGTGT TGCTGGTGGC GAAAAAACGC AGTGCCCTTA AGCATCTGCA CGATCAACTG
CGTCAAAAAA AGATGCAGAA AGATTACTTG GCCTTAGTCA AAGGTGAGTG GTCGGCGCAG
GATAAAGTAG TTAAACAGCC GCTGTTAAAA TTAACGCTTA AGTCGGGCGA GCGTATCGTT
CGAGTTAATG GCGAGGGCAA ACCCTCTGAA ACTCGCTTTA AGATTGTGCA GCGTTATCAA
GGCTGTACGC TGGTTCAGGC GAGTCCTGTC ACTGGGCGTA CCCACCAGAT TCGGGTGCAT
TGTCAATATA TGGGACACCC CATCGCCTGC GATGAGAAAT ACAGCGAGCA GACGTTTGAT
GACAGTATGC GCGCACTTGG CCTGAGTCGA CTGTTTCTCC ATGCGGCAGA ATTGATGTTT
ATTCATCCTG AAAACGATGA GGTGATGCGA GTCTCTGCAC CACTGGATGA TAATTTGCAG
CAACTGTTAA GTAAGTTAAA GCGCGCTTAG
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| Protein sequence | MAVVISRWHI MNTESPQLQV QLITIDEDHL DQRIDNFLIT VLKGVPKSMI YRIVRKGEVR
VNKKRIKPEY KLQIGDVVRV PPVRMAEQDN RTAPSANLSK VSQLEDRILH EDNHLIVLNK
PAGIAVHGGS GVDYGVIEAL RSLRPQQKFL ELVHRLDKDT SGVLLVAKKR SALKHLHDQL
RQKKMQKDYL ALVKGEWSAQ DKVVKQPLLK LTLKSGERIV RVNGEGKPSE TRFKIVQRYQ
GCTLVQASPV TGRTHQIRVH CQYMGHPIAC DEKYSEQTFD DSMRALGLSR LFLHAAELMF
IHPENDEVMR VSAPLDDNLQ QLLSKLKRA
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