Gene Shewmr4_2396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2396 
Symbol 
ID4252967 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2856771 
End bp2857517 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content45% 
IMG OID638119028 
Product3-oxoacyl-[acyl-carrier-protein] reductase 
Protein accessionYP_734524 
Protein GI113970731 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000542518 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTATCA ATCTGAGTTT AGCGGGCAAA GTTGCCTTAG TGACAGGCGC GAGCCGTGGT 
ATTGGCCGTG CGATTGCCGA AACCTTAGTC GAAGCTGGTG CGATTGTGGT AGGAACTGCC
ACAAGTGAGA AGGGCGCCGC AGCAATTCAA GAATATCTGG GTGACAAAGG TTTTGGTTTA
GTGCTTAATG TTACCGATAG TCAATCCGTC ACCGATTTAT TCGATTCGAT CAAAGAAAAA
GCGGGTGATG TTGATATTCT AGTCAACAAC GCGGGTATCA CCCGTGATAA CTTGCTGATG
CGAATGAAAG ATGATGAATG GAACGATATC ATCGATACCA ACCTGACATC ATTGTTCAGA
CTATCAAAAC CTGTAATGCG TACCATGATG AAAAAGCGTT TTGGCCGGAT CATCAATATC
GGTTCTGTGG TAGGCACTAT GGGCAATGCA GGTCAAGTTA ACTACTCGGC AGCAAAGGCT
GGTTTAATCG GATTTACAAA ATCTCTTGCA AGAGAGGTTG CATCTCGTCA AATTACAGTT
AATGCTATCG CTCCTGGATT TATCCAGACC GATATGACTG ATGAGCTGAC CGAAGATCAG
CAAAAAGCTA TCATGTCTCA GGTTCCGATG GAACGATTAG GGCAAGCGCA AGAAATTGCC
AATGCAGTGC TCTTTTTGGC GTCGGATTCT GCCGCTTATA TCACAGGCGA GACTTTGCAT
GTGAATGGCG GAATGTACAT GGTTTAA
 
Protein sequence
MSINLSLAGK VALVTGASRG IGRAIAETLV EAGAIVVGTA TSEKGAAAIQ EYLGDKGFGL 
VLNVTDSQSV TDLFDSIKEK AGDVDILVNN AGITRDNLLM RMKDDEWNDI IDTNLTSLFR
LSKPVMRTMM KKRFGRIINI GSVVGTMGNA GQVNYSAAKA GLIGFTKSLA REVASRQITV
NAIAPGFIQT DMTDELTEDQ QKAIMSQVPM ERLGQAQEIA NAVLFLASDS AAYITGETLH
VNGGMYMV