| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2379 |
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| Symbol | upp |
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| ID | 4252950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2836757 |
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| End bp | 2837383 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638119011 |
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| Product | uracil phosphoribosyltransferase |
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| Protein accession | YP_734507 |
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| Protein GI | 113970714 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0035] Uracil phosphoribosyltransferase |
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| TIGRFAM ID | [TIGR01091] uracil phosphoribosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0149049 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.622917 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAGTTG TCGAGGTTAA ACACCCGTTA GTGCGTCACA AAATCGGCCT GATGCGTGAA
GGTGACATTA GCACTAAACG TTTCCGTGAG CTAGCCGCCG AAGTGGGCAG CTTATTAACC
TATGAAGCTA CCGCAGATTT CGAAACCGAA ACTGTTACGA TTGAAGGCTG GAATGGTCCA
GTGGATGTGG ATCAGATCAA GGGCAAGAAA GTGACTGTTG TGCCTATCCT GCGTGCGGGT
TTAGGCATGA TGGACGGCGT ACTTGAGCAT ATTCCAAGTG CGCGTATTTC GGTTGTGGGT
ATTTACCGCG ACGAAGAAAC CTTAGAGCCA GTGCCATATT TTGAGAAGCT GGCCAGCGAC
ATGAACGAGC GTATCGCGCT GATCGTTGAC CCTATGCTGG CAACCGGCGG CTCTATGATT
GCGACTATCG ACCTGCTGAA AAAACGCGGT TGTACGTCGA TTAAAGCTTT AGTGTTAGTC
GCTGCGCCCG AAGGGATTAA AGCCCTTGAA GCGGCTCACC CAGATGTTGA GCTGTATACT
GCGGCTATCG ACAGATGCTT AAACGAGAAG GGCTACATTC TGCCTGGTTT AGGTGATGCG
GGTGATAAGA TTTTTGGTAC TAAATAA
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| Protein sequence | MKVVEVKHPL VRHKIGLMRE GDISTKRFRE LAAEVGSLLT YEATADFETE TVTIEGWNGP
VDVDQIKGKK VTVVPILRAG LGMMDGVLEH IPSARISVVG IYRDEETLEP VPYFEKLASD
MNERIALIVD PMLATGGSMI ATIDLLKKRG CTSIKALVLV AAPEGIKALE AAHPDVELYT
AAIDRCLNEK GYILPGLGDA GDKIFGTK
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