Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2378 |
Symbol | |
ID | 4252949 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2835868 |
End bp | 2836533 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 638119010 |
Product | RDD domain-containing protein |
Protein accession | YP_734506 |
Protein GI | 113970713 |
COG category | [S] Function unknown |
COG ID | [COG1714] Predicted membrane protein/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000398185 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.783398 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTTTG TTCCAAATTA TAATAACTAC ACCTTGGATG AACTGATTGA TGTCCAAAGG AATATCAATC GCGACAAATA TCCTGATACA GCGGCGGAGG TTGATGCGCT TATTTCGCTA AAACTTCAGG ATCCTGAGAT TAAATCGTGC ATGGATAAAC AAGCGGAATT AGAAAAGTAC GCTACGTTTG GTCCTCGATT TTGGTCCTCT ATAATCGATA GCGTAATCAT CAGTCTTTGT TCTGTTATTA TTGTATCTGC GATTATGCAC GTAGCGCCCG TATTCCAAGT CGCGTTAAGT TATTTCGATA CTTGGATATT TGCATTGTAT TCCGTGCTGC TCCACACCCT TTATGGCCAA ACGTTTGGGA AAATGATCTT TGATATCAAG GTAGTTGACT ATAAAACTGA AAGACCCATT AGTTTTAATC AGGCCCTATT AAGGGATAGT GTTCCCATCA TCATGTTAAT TTTACTTGTG TTTTTCAGTG TATTTTTTCC GCTTGAGACT GCAGAGGATA TGTCGAGTTG GAAGCTTTAT ACCATCATAG GTTTAAGTAT TTCTTTCCTT ATATGGCATC TACTCGAAAT CATTACCATG TTATTTAATG AGAAAAACAG GGCCATTCAT GACTATTTAG CTGGGACGGT CGTTATTCGT AGCTGA
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Protein sequence | MDFVPNYNNY TLDELIDVQR NINRDKYPDT AAEVDALISL KLQDPEIKSC MDKQAELEKY ATFGPRFWSS IIDSVIISLC SVIIVSAIMH VAPVFQVALS YFDTWIFALY SVLLHTLYGQ TFGKMIFDIK VVDYKTERPI SFNQALLRDS VPIIMLILLV FFSVFFPLET AEDMSSWKLY TIIGLSISFL IWHLLEIITM LFNEKNRAIH DYLAGTVVIR S
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