Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2368 |
Symbol | tolB |
ID | 4252939 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2824714 |
End bp | 2826042 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638119000 |
Product | translocation protein TolB |
Protein accession | YP_734496 |
Protein GI | 113970703 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000751795 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.188875 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATTT TGGCAAAATG GTTAGCATTG GCGGTTCTGC TTTGCACTAT GCCGGCAAAA GCGGCGCTGG ATATTGTGAT CACTGAGGGT GTGGATGCGG CGCGTCCAAT CGCAGTGATG CCATTCCAAT GGCAAGGAGC GGGTGCACCA CCTCAGGCGA TCGCCGATGT GGTGATGTCA GATTTAATAC GTAGCGGTAC CTTCAAACCA TTAGATGAAT TAGGGTTACC ACAACGTGGT ATCGGTGCTT TAGCCCAGTT TGACGCGAGT GCGTGGGCGA ATGTGGGTGC CGAAGCCGTT GTTGTGGGTT CGGTAAAACC CTATGGCACA GATCAGTTTT TGGTGAGCTT TGACCTTATC GATTTGGTTA AAGCGCAAAA CCAAGCGCTA AAAGGGCCTA CCAGTGCGAC AGAATTTTTG ATGGATAGTC GCCAAACGGT GATTTCTGCG GCGCAGTTCC GTCAATATGG CCACCGTATC AGCGATATCG TCTATGAGAA GCTGACGGGT ATTCGTGGTG CTTTCTTAAC CCGTATTTCC TACGTGGTGG TTAACCACAG CCAGAAAGCG GCTTATTCAC TGATGATCGC CGACTATGAC GGTTACAACG AGCAGATGTT ACTGCGCTCT CCAGAGCCGC TGATGTCTCC TTCTTGGTCA CCCGATGGCC GTCGTTTAGC TTATGTGAGC TTTGAAAACA AAAAGGCTGA GATTTTTGTG CAGGATCTTT ACACCCAAGT ACGTACTAAG GTGAGTAGCT TCCCAGGCAT TAACGGTGCA CCGACATTCT CGCCCGATGG TAAGTCCTTA GCAGTGACCC TCTCAAAGGA TGGTCAACCT GAGATTTACG TTATCGATAT CGCCACTAAG GCAGCAAAAC GTATTACCAA CCACTATTCC ATCGATACTG AGCCATCTTG GTATCCCGAT GGCAAGTCAT TGTTGTTTAC CTCCGAGCGC GGTGGTAGAC CACAGTTATA TCGTGTAGAT TTAAATTCAG GCAAAGTGAC CCGTGAAACC TTTGAAGGTG AATGGAATTT AGGTGGTTCA ATTACCCCTG ATGGTCGCAG CATGATTTTT GTGAATCGCA CAAACGGTAA ATTTAATATT GCACGTATGG ATTTAAGTAC GCGCTTTATG CAGGTGCTGA CATCGACACG TTTGGATGAA TCTCCAAGTG TGGCCCCTAA TGGTACTATG GTGATTTATG GCACTACGTA TCAAGGCAAG CAAGTTTTAG CAGCTGTTTC TACGGACGGA CGCTTTAAAG CGAGATTACC GGTGGGTCAG GGTGAGGTGA AATCACCTTC TTGGTCTCCG TTTCTCTAA
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Protein sequence | MKILAKWLAL AVLLCTMPAK AALDIVITEG VDAARPIAVM PFQWQGAGAP PQAIADVVMS DLIRSGTFKP LDELGLPQRG IGALAQFDAS AWANVGAEAV VVGSVKPYGT DQFLVSFDLI DLVKAQNQAL KGPTSATEFL MDSRQTVISA AQFRQYGHRI SDIVYEKLTG IRGAFLTRIS YVVVNHSQKA AYSLMIADYD GYNEQMLLRS PEPLMSPSWS PDGRRLAYVS FENKKAEIFV QDLYTQVRTK VSSFPGINGA PTFSPDGKSL AVTLSKDGQP EIYVIDIATK AAKRITNHYS IDTEPSWYPD GKSLLFTSER GGRPQLYRVD LNSGKVTRET FEGEWNLGGS ITPDGRSMIF VNRTNGKFNI ARMDLSTRFM QVLTSTRLDE SPSVAPNGTM VIYGTTYQGK QVLAAVSTDG RFKARLPVGQ GEVKSPSWSP FL
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