| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2361 |
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| Symbol | |
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| ID | 4252932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2812911 |
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| End bp | 2816351 |
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| Gene Length | 3441 bp |
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| Protein Length | 1146 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638118986 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_734489 |
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| Protein GI | 113970696 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00248753 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATCTCA CCTTAGTCGT CGCCGTTATT GCTATTTGTT ATGTCTCACT TTTATTCCTT
TTAGCCTGGG GAGCGGAGCG TTGGTTTAGC GGCGTGACCA AGAAGCTGCA AGTGGGCATT
TATGGCTTAA GTCTGGCGGT TTATTGCTCT TCCTGGAGCT TTTTAGGTAC GGTCGGGCAG
TCGGCTAAGG ACTTTTGGTC TTTCATCCCG ATTTTTATCG GCCCGATCCT TATCTTCACC
TTAGGGTTTG GCATGTTGCG CAAGATGGTG CTCGTGTCCA AGGCGCAAAA TATTACCTCG
GTTGCCGACT TTATCGCCGC CCGTTACGGT AAGTCACAAA CCTTGGCGGC TATTGTTACT
CTCATCGCGC TATTTGGCAT CATGCCCTAC ATAGCCTTGC AGCTTAAGGC GATGGTGTTT
AGCCTTAATT TGTTTCAGCC CGCAGACGAT CCTTTAAACG GCATTACTAT CCCGCTACTT
ATCACCGCGC TGCTGGCGAT TTTTGCCATT CTATTTGGGA CGCGTAAGCT CGATGCCACC
GAACATAACC CCGGTATGAT GCTGGCGATT GCCTTTGAAT CGTTAGTCAA ACTGGCGGCG
TTTTTGTTGG TGGGGATTGT GATTAGCTTT GGCGTGTTCG ATGGTTTTAG TGATATCTGG
CAGCAGGCGA GCGAAAAAGC ATTAATTAAT TACCCTAATC CTCGAATCGA AGCCTTAATG
CCTGAGCTAC TCGTCGGCAT GGCGGCGTTT TTATGTATGC CGCGGCAATT CCACGTGATG
GTGGTGGAGT GTGCCGATGA GTCGGTGTTG TCCAAGGGGC GCTGGTTATT TCCGCTGTAT
TTGGCCTTAT TTGGCTTATT CGTTGGGCCA CTGGCTTTAG CGGGTAAAGT GATCCTCGGT
GATAGCGTTG CCGCCGATAC TTATGTGATC AATTTACCGC TTGCCTTAGA TCATCCACTG
CTTGCCGTCA TTGCGCTGTT AGGCACTTTA TCTGCGGCAA CCGGCATGGT GATTGTGGCG
GTAGTGACGA TAAGCGTGAT GGTGAGTAAC GAGTGGTTGG TGCCAGTGAT GCTGCGCACG
GGCAATATCC GTGAGAAAAA TTTCAGCCAG TTTTCGCAGA TGCTATTAAA TGCGCGCCGC
CTTGCCATCG TTATCATCCT TGGTTTGGGT TATGGCAGTT ATCTGGCGCT CGCCGACAGT
GACTCGCTAT CGCACCTTGG GATGTTATCC TTCGGGGCGT TTGCCCAGCT TGCTCCCGCG
CTGGTGGGCG GGCTCTATTG GAAGCACGGT AATCGCGCCG GGGTGTTTTT AGGCTTGAGT
GTGGGTTTTG GCCTGTGGTT TTACATCATG CTAAGCGGCA TGAATGACGG CCAAAATGTG
GCGACCTTAT TGTCGAGTAA TATCGATCTG TTAGATGCCA TTACCCCCAA TGTGCGCGAT
GCCCTCACAG CCTTGTTTGC CAATATTGCC TGCTATATTT TAGGCTCGAT TTGGTTTAGG
GCGGGGGTTG CTGAGCGTAT TCAAGCCAGT GCCTTTGTCA GCCCGGGTAA ACTTAAAAAT
AATGCTAATA AGAAAAATGG TCCCATCTCT CAGCAGGATT TGCTGATCTT AGCCAGCCGT
TTTGTTAGCC CAACCCGCGC CTATGAAAGC TTTAGCCGAT TCTCCACCGA GGCGGTCAAG
AGTGACAGCT GGCACAAGGC TGCGACACCT GAGCTTATCG CCCACACCGA ACGTTTACTC
GCCGGGGTAC TCGGTGCCTC CAGTGCCTCC TTGGTAATGG ACTCGGTGTT ACAAGGGCGC
GACTTGGCCT TAGACGAAGT CTTTAGCCTA GTGGATGAAG CCTCATCCAA AATTATGCTT
AGCCAAGATA TGCTGCGAGG AGCTATCGAG CATGCCTATG AAGGGATGAG CGTTATCGAC
AGCGATCTGA ACCTAGTGGC ATGGAACTAC AAATATGTCG AGTTATATCA ATATCCTGAG
GGATTTTTAC AGCAAGGCAT GCCCATCGGT GAAGTGATCC GCTTTAACGC GGCGCGGGGA
TATTGCGGCG AGGGGGATAT TGAGTCGCAG GTCGAAAAAC GCGTGCAGCA TATGCGCAAT
GGCACGCCGC ACACCTCAGA GCGGCAACGT AAAGACGGCA AAGTGATTAA AATTCAAGGC
AATCCTATGC CCGATGGCGG CTTTGTGATG ACTTTTACCG ATATTACTCA ATACCGTGAG
CAGGAGCGGG CTTTGCTTGA AGCCAATGAA ACTCTCGAAT CGCGAGTCAA AGAGCGAACC
TATGAATTAG CCATGTTAAA CAGTGAGTTG CTTGAGGCTA AGGCGCTGGA AGAAATGGCG
AACGCTTCTA AGAGTCGCTT CTTAGCGGCG GTAGGGCACG ACTTAATGCA ACCCCTGAAT
GCGGCGAGAC TGTTTACCGC GTCCTTGTCC CAGTATCCAA ATCTGGACCG TGAGGCGCGC
ACCACCTTAT CCCATGTGAA TAGCTCGCTC AAAACCGCTG GCGAGCTACT TACTGACTTG
CTGGATATTT CTAAGCTCGA TTCCGGCATG GTAGAGGTCA ATCGCCGTGA TTTTGCCATA
TCCGAGCTGC TCAATGGCCT GTCGGTCGAA TTTGAGGCGA TGGCGGCGGA CAATCAAATT
CGCTTTAAGA TGATCCCCTG TAGCGCGACG GTAAATTCCG ATCCTTCGCT TCTCAGACGC
GTGCTGCAAA ACTTCTTAAC CAATGCTTAC CGTTATGCGC GAGGTGGACG GGTTCTGTTT
GGCTGTCGTC ATCGAGGCAG TGAGTTAGAG ATCCAAGTAT TGGATACGGG CTGCGGCATT
GATGAGCACG AAACCCGTGA AATTTTCAAA GAGTTTAAAC GCTTAAATAA TCCACGTAGT
AAGAGCGTCA GCGGCCTCGG CTTAGGGCTG GCGATTGCCG ACCGGATCAG CCGGGTGCTG
AATCACGGTA TTCAGGTGTC TTCGCAGCTG GGGCGCGGCT CAGTGTTTTC CATTAGCGTA
CCTTTGGGGG AAACCGTGCG TCAGCCACTT GTGAAGGCTT TACCGTCCCT ATTGCAACCC
TTGTCTGGGA TTAAAGTGCT GTGTATCGAC AATGAAGAGG CGATTTTGGC GGGGCTTGAG
AGTCTACTCA GTCGCTGGCA GTGCGAGGTG ATATGCGCCA AGGACTTATC CGATGCGCGG
ATTAAATTAG GTCTTAAAGG GGTGGCGCCA GATATCGTTT TAGCGGATTT CCACTTGGAC
GATGGTCAAA ACGGTGTCGA TGCGATGGAC GGGATCCGCG CGCTTTATGG CAAAGATTTA
CCGGGGATTT TAATTACGGC CAATACCCGC AAAGAGATAG TGGAAGATGT GCAGCGCCGG
GGTTATCACT ATATGGCGAA GATGATTAAA CCCGCGGCAC TGCGGGCATT GATCTCAAGC
CTAGTAAAGA AGACTCAGTG A
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| Protein sequence | MNLTLVVAVI AICYVSLLFL LAWGAERWFS GVTKKLQVGI YGLSLAVYCS SWSFLGTVGQ
SAKDFWSFIP IFIGPILIFT LGFGMLRKMV LVSKAQNITS VADFIAARYG KSQTLAAIVT
LIALFGIMPY IALQLKAMVF SLNLFQPADD PLNGITIPLL ITALLAIFAI LFGTRKLDAT
EHNPGMMLAI AFESLVKLAA FLLVGIVISF GVFDGFSDIW QQASEKALIN YPNPRIEALM
PELLVGMAAF LCMPRQFHVM VVECADESVL SKGRWLFPLY LALFGLFVGP LALAGKVILG
DSVAADTYVI NLPLALDHPL LAVIALLGTL SAATGMVIVA VVTISVMVSN EWLVPVMLRT
GNIREKNFSQ FSQMLLNARR LAIVIILGLG YGSYLALADS DSLSHLGMLS FGAFAQLAPA
LVGGLYWKHG NRAGVFLGLS VGFGLWFYIM LSGMNDGQNV ATLLSSNIDL LDAITPNVRD
ALTALFANIA CYILGSIWFR AGVAERIQAS AFVSPGKLKN NANKKNGPIS QQDLLILASR
FVSPTRAYES FSRFSTEAVK SDSWHKAATP ELIAHTERLL AGVLGASSAS LVMDSVLQGR
DLALDEVFSL VDEASSKIML SQDMLRGAIE HAYEGMSVID SDLNLVAWNY KYVELYQYPE
GFLQQGMPIG EVIRFNAARG YCGEGDIESQ VEKRVQHMRN GTPHTSERQR KDGKVIKIQG
NPMPDGGFVM TFTDITQYRE QERALLEANE TLESRVKERT YELAMLNSEL LEAKALEEMA
NASKSRFLAA VGHDLMQPLN AARLFTASLS QYPNLDREAR TTLSHVNSSL KTAGELLTDL
LDISKLDSGM VEVNRRDFAI SELLNGLSVE FEAMAADNQI RFKMIPCSAT VNSDPSLLRR
VLQNFLTNAY RYARGGRVLF GCRHRGSELE IQVLDTGCGI DEHETREIFK EFKRLNNPRS
KSVSGLGLGL AIADRISRVL NHGIQVSSQL GRGSVFSISV PLGETVRQPL VKALPSLLQP
LSGIKVLCID NEEAILAGLE SLLSRWQCEV ICAKDLSDAR IKLGLKGVAP DIVLADFHLD
DGQNGVDAMD GIRALYGKDL PGILITANTR KEIVEDVQRR GYHYMAKMIK PAALRALISS
LVKKTQ
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