| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2350 |
|---|
| Symbol | |
|---|
| ID | 4252921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2799519 |
|---|
| End bp | 2801474 |
|---|
| Gene Length | 1956 bp |
|---|
| Protein Length | 651 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 638118975 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_734478 |
|---|
| Protein GI | 113970685 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000563575 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000000441707 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGATGGGAA TATGGGTTCC AATACGTCGA TTAAGTATTA TCGCGGCGGC CGTCGCGCTC
AGTGCCTGTG GCGGCGGTGG TGGAGATAAT AATGATGGTG GTACAGTCAC CCCTCCACCT
ACCACTAACG TGCCACGCTG CGCCACTGTC ACTCCGCTAG TGACCACGGA CTCAGGCGCC
ATCCGCTTTA AAACTGAGCC TCAATATGTG GCGGGACAAT CCAGTGCCAT TATTGCCAGC
CTAGGGAATC GCGATTCACA GGCTCTCACC TTCCGCTGGC AACAGTTAGA AGGCCCCAGC
ATTGAACTCG TGAGTCAAAA TAGCCCAGTA TTAGCCTTCG ATATCCCCGC AGCAGGCAGC
TATCGTTTTA GCTTACATAT CAGCGGCAGC AATATCGATG AAACGGCTGA TATAGCGATC
AATGCCGACA GCAGCGCGGG GGCAATGCTA AACATTCGTC AGGATCATCA AGCCGTTGAG
GGTAACGATG TCAGCCTACG CATCGCTCAA CAAGCCGGCC TTAGTGCATC TAGCATCAAT
TGGTGTATCG CCGAGGGCCC CAGTGTCAGT CTCGATATCA GCGATCCCTT TAGACCCCTA
TTTACTGCGG CCACTGTTGC TCAAGATACC TTAACTCGCC TTAGGGCATC GGCCACGATT
AACGGTAATA CCGTGACAGA CGAAGCCTAT GTGCTCACCA CGGCTGCGCC CGCTATAGAC
CCCAAGAGCT ACTTCGATAC GCCAGTGGCA CGCACCCACG CTTATCATCC CGCTTCTCCC
TATGCCAGCG CCTTAACGAG CTGTGTGTAC TCAAATCAGT TAAAAGAAGC CTGTACTATC
AATCAATTGC CGCTTATCGG CCAAGTCTCA AATACGCTCG ATGTCGACAC TATTCTCGAT
CGCGTCTTAG TGTCCCACGA TTGGATGGGA GACAATTTCG AAGCATTTTT ACGTCAAATG
GACCCGAGCA GCGATTTTGC CCGCCTACTA CAATCGGTCA CTGCCGTGGT GATAAGCTAT
GATGTGCGCC CCTCGTTTTA TTGGGTGGTC ACAGGGGCGA TTTATCTTGA CCCGAATGAT
TTGTGGCTCA CGCCAACCCA GCGCGACACC ATTAACGAAG CCCCAGATTA TCGCAGCGAC
TTTGGCAGTG AGCTCAATTT CATCATGCCG TGGCGTTATG TTAAAAATAA CCAATATGCT
TCACAGGGAT TCCCAATCAC TACGCGCGCC ACGCGCACGC TCAGTCAGAT TAATCCCGAT
CTCGCCTCAC TCTTGTACCA TGAGCTCGCC CACGCCAATG ACTTCTTCCC AAGAAGCATA
CACGCCACAC TCACAGGCCC CAGATTGTTG GACGACTATA GCCGTAGAAA TGCCAATAAG
AGTTTGATAT CCGATCAAGT GAGTCGCAGC TATCCCCTCA CCAGCACAGA GATGACAGGT
CTTGCGGCGG TGAGCTTCTT AGGCGCCAAA GCCACTGCAG CCCAAAAAGC CTATCAACCT
TCGGATGTGA GTACGTTTTT CTCCGGTGAT ATCGCCAATG ACTTTTACAA CTATTCCAGT
ACCCGTGAAG ATGCGGCGAT GTTGTTCGAA GAAGCCATGA TGAGTTATCG CTATCAAATC
CAGCGCGATG TGGCCGTCAC TAACCTGCCC GCCGTGATCA CAGCAGATAC TGTGATTGTT
GACTGGGGAC AAAGGGGCAG AGTTGGCGAT GATAGCCTAG CGAACCGCGC TGCCTTGGTG
ATCGATGGCA TGCTGCCAGA GCTTGATGGC ATCAACCTGC TCACGAGCCT GCCCGAGCCA
ATAGCGATGA CGCAAGGCCA AAGCTGGCGC CAAACCCTGG GGATTTCGCC CAATACCACA
GTGAAAGAAC TACAAGGGGT TGCGGCAAGT AGCGAAACGC TTATCGAGCC AGAGCTCCGT
TTCAGTGGCG ATCGTCACCG CCATCCACAG CAATAA
|
|---|
| Protein sequence | MMGIWVPIRR LSIIAAAVAL SACGGGGGDN NDGGTVTPPP TTNVPRCATV TPLVTTDSGA
IRFKTEPQYV AGQSSAIIAS LGNRDSQALT FRWQQLEGPS IELVSQNSPV LAFDIPAAGS
YRFSLHISGS NIDETADIAI NADSSAGAML NIRQDHQAVE GNDVSLRIAQ QAGLSASSIN
WCIAEGPSVS LDISDPFRPL FTAATVAQDT LTRLRASATI NGNTVTDEAY VLTTAAPAID
PKSYFDTPVA RTHAYHPASP YASALTSCVY SNQLKEACTI NQLPLIGQVS NTLDVDTILD
RVLVSHDWMG DNFEAFLRQM DPSSDFARLL QSVTAVVISY DVRPSFYWVV TGAIYLDPND
LWLTPTQRDT INEAPDYRSD FGSELNFIMP WRYVKNNQYA SQGFPITTRA TRTLSQINPD
LASLLYHELA HANDFFPRSI HATLTGPRLL DDYSRRNANK SLISDQVSRS YPLTSTEMTG
LAAVSFLGAK ATAAQKAYQP SDVSTFFSGD IANDFYNYSS TREDAAMLFE EAMMSYRYQI
QRDVAVTNLP AVITADTVIV DWGQRGRVGD DSLANRAALV IDGMLPELDG INLLTSLPEP
IAMTQGQSWR QTLGISPNTT VKELQGVAAS SETLIEPELR FSGDRHRHPQ Q
|
|---|
| |