| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2330 |
|---|
| Symbol | |
|---|
| ID | 4252901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2779123 |
|---|
| End bp | 2780994 |
|---|
| Gene Length | 1872 bp |
|---|
| Protein Length | 623 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 638118955 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_734458 |
|---|
| Protein GI | 113970665 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.865327 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0759502 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAGC TGATTTTAAA TATATTATTA GGTATCTTAG CTGCGCTCTA TACTTTTAGT
GCTAGTTCAA TACCACAAAG CATACAGATT CATAAGTCAG GCGAGATTAT AAATGGTGAG
TTTTCAACAT CATTTCTGTC ACCTGCTCTT GACAAGTTTG TCATTTCGAT CTCTATGGTT
TCTGATACAA ATGTTAGCGA TATTCGGTTA ATTACCCCGA GTGGAGTTGT CATTAACTCC
GAGAATGCTT CAAGTTACAA TTGTAACTTT TTATTCTTTA CCCCATTGAC TCCGGAAGAA
CACTTAATTT CGTTAGAAAA TAGCATTATC ATAGAGCTCA ATAATGTTGC CTCAGGTAAA
TATGTCATTA CAGGAAAGGC GAGTGGCACT CAAAATCTAA TTCCAATCAG AATAAAATTC
CCTACATCAA AAATAAATTT TGCATTGACA CTTGGTGAAG TTGGTCCAAA TAAAAAACCA
ATTAGCGTAG GAAATATCTT TCCTGTTTAT GTGCAACTGT ATGATGATAG CGTTCCACTG
GCTACAGCCG AAGCCTCTTT TGAATTTGTG AAAGATGGTG CTGTAGTCAG CAAGATTATA
GCTGTAGATG ATGGCTCTGG AATGGACTTC AAAGCTAGAG ATGGGAGTTA TCATGCTTTT
TTCACCCCTG AGGTTGAGGG GGAGTACGCT GTGCTTGTCA GAATACAAGG CACTAATCTA
AGCGGTGAGT TGTTTGAGAT GAGTGTAACT CAAAATTTTA TTTCTATACT CCCGCAAGTA
TATGTGACTG GTAAGGTTGA AGAAGTCTTG GTTGACTTGG ATAAAGACGG TTATATTGAT
GAACTCAGAT TGGAGTTTGA GACTGCTGGC CCATTTCAAT CTACAGGATT TTATTATAAC
AGGGTTACGC TAGAGACCGA AGATGGCACT AAATTTTTTG CTGGTCGCAA AATGGATGCT
ACAGAAAATA AAATTTCTGT AACGTTTAAA GGGGAGGAAC TCAGGAGGTT AGGATATTCA
GGTAAATTTA CAGTTGCACA TTTCTGGCTT GATTATGGTT ATGTGAGGAT TCAAGATAAA
GATAATTTTT ACATTACTTC ATATTTTAAA AATGATTCCT GGGAGCGTGA CGATTTACTT
TATTTAGGCA ATGTGATATT CGAGCCTATT AACAGTGAAG ATAGCCGTTT CATCGAGAAG
ATAGACGTTT CTTTTGAGGT TGATACACTT CCCGCAACAG CAAAGTTTGG CTATTCGGCG
ACAATAACCA CTGTCGGTGA CGAGCATGTC GGAGTCTATG GCAATCCTGA CATTGAACTG
AAGAAGGGGG TTAACAGAAT TACATTCTCC ATTCCTGAAG CTGATTTTGC AAAACTACAA
TCAAATACAG CATTGAAAAT AAAACAATTA ACCATGTATC CCTTAATAAA AGGTGGCAAG
GTTATATCTA AAAGAAATGT GGCTACCAGT TTAGTATATT CGTGTTGGGA CTTTCGAGGT
TGTTCTACGG CCGACAATGC GATTCCTGTA GCAGTAGATG ATGTTGTAAC TTCTCTTGGA
AAAGCAATGT ATATACATGT TGCTCAAAAT GATCTCGATG ATGACGGCGA CTTACTTAAG
GTTAACTCAG TAACACCCGC TCAGCATGGG ATAGCAGAAA TAGTCGGTAA TTCTATTCAA
TATACGCCAA CTTCAGGCTT TGAAGGTGAT GACGTTTTTC AATACGAAAT AGTTGATATT
CATCCAAGAA ATAATATTTT GAAGGGAGGG TCTGCAATTG GCACTGTGCG CGTATCAGTA
AAACCTAACC ATGCACCTAT TGCTAATGTT GATTCCTATC ACATCCCCGA AAACATGACC
TCGTATTTCT AG
|
|---|
| Protein sequence | MNKLILNILL GILAALYTFS ASSIPQSIQI HKSGEIINGE FSTSFLSPAL DKFVISISMV
SDTNVSDIRL ITPSGVVINS ENASSYNCNF LFFTPLTPEE HLISLENSII IELNNVASGK
YVITGKASGT QNLIPIRIKF PTSKINFALT LGEVGPNKKP ISVGNIFPVY VQLYDDSVPL
ATAEASFEFV KDGAVVSKII AVDDGSGMDF KARDGSYHAF FTPEVEGEYA VLVRIQGTNL
SGELFEMSVT QNFISILPQV YVTGKVEEVL VDLDKDGYID ELRLEFETAG PFQSTGFYYN
RVTLETEDGT KFFAGRKMDA TENKISVTFK GEELRRLGYS GKFTVAHFWL DYGYVRIQDK
DNFYITSYFK NDSWERDDLL YLGNVIFEPI NSEDSRFIEK IDVSFEVDTL PATAKFGYSA
TITTVGDEHV GVYGNPDIEL KKGVNRITFS IPEADFAKLQ SNTALKIKQL TMYPLIKGGK
VISKRNVATS LVYSCWDFRG CSTADNAIPV AVDDVVTSLG KAMYIHVAQN DLDDDGDLLK
VNSVTPAQHG IAEIVGNSIQ YTPTSGFEGD DVFQYEIVDI HPRNNILKGG SAIGTVRVSV
KPNHAPIANV DSYHIPENMT SYF
|
|---|
| |