| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2313 |
|---|
| Symbol | |
|---|
| ID | 4252884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2759644 |
|---|
| End bp | 2760171 |
|---|
| Gene Length | 528 bp |
|---|
| Protein Length | 175 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638118938 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_734441 |
|---|
| Protein GI | 113970648 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.352653 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTAA ATCCTGATTT TTTTCCGCTG ACTCAAATGG CGCAGCGATT TGTCGATCAG
CTCGCCCAGT GCCGTCGCTT AGGGTTAACC GTGCTCGAAG CCAGTGAGCA CCACGTACTG
ATTGAGTTGC CCTATAGCAC TGAGTTAATT GGTTATCCCG ATACGGGTGT TATCCACGGC
GGGGTGATAA CCACCCTGAT GGACACCGCC TGTGGCAGCG CGGTGGTGAG TGCGATTTTT
CAAAAATATC AATCCTTAGA AATTTCGCCC ACCCTCGACT TACGGGTCGA TTATATGAAG
CCCGCCCAGC CCCATAAGCC AGTTTATGGC TTTGCGGAAT GCTATAAGTT GTCATCTAAT
ATCGCCTTTA CCCGCGCCAT CGCCTATCAG GACAGCATCG ATGATCCTAT CGCCCATGCG
GTGGGCTCTT TTATGCGGAT CAGCCCCGAA ATGGTGGGCG ATGCATTTAG ACAAGCCTTG
ATGGGAGAAG CCGTGCCGCC CTTAGGAGAG ACAGATGAAC TCAAATAA
|
|---|
| Protein sequence | MKVNPDFFPL TQMAQRFVDQ LAQCRRLGLT VLEASEHHVL IELPYSTELI GYPDTGVIHG
GVITTLMDTA CGSAVVSAIF QKYQSLEISP TLDLRVDYMK PAQPHKPVYG FAECYKLSSN
IAFTRAIAYQ DSIDDPIAHA VGSFMRISPE MVGDAFRQAL MGEAVPPLGE TDELK
|
|---|
| |