| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2301 |
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| Symbol | |
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| ID | 4252872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2746688 |
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| End bp | 2748289 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638118926 |
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| Product | hypothetical protein |
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| Protein accession | YP_734429 |
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| Protein GI | 113970636 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01887] dipeptidase, putative |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00186231 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTGC CTCAGTTTAA CTGTACGAGC CTCTATCGTC GTTTTTCTTA TTCCCTATTA
GCCGCTGCGC TGTGGACATC GACGCAAGCT GCAGCATCGC CAATCACGCT TAGCCAAGAT
GCGCTTAAGG TGGCCGATTA TGCGGTGAGC ACCTATGACG CGCAGATGGT CGAGAGTCTG
GCGCATTTAA TCAGTTTTAA TACCCAAGCG GTGGAGGGGC AAACGCCCGA TACCAACCCT
GCCTTTATTG GTTTTAAGTC GAGTTTAAAA AGCTTGAGCC AAGAACTCGG GCTCGATTAT
GCCGATCACG GTTATGTGGT GCTGATAGGT CTCGATGCCA ATGTTGTCGA TGCCCAACGC
TCACAGGTTG AGAAATTGGG CATCGTCACC CACGGCGATG TGCAACCCGC CAATCCCGCG
CTATGGGCCA AGAGCCCCTA TGTGCTGGAT ACCGAGTCTG AACCTGGCAA GTTGATAGGT
CGCGGCACTG AAGATGATAA AGGCGCGATT GTCACCGCCA TGTATGCGAT GAAGGCCATC
AAAGATAAAC AACTCAAACG GGAAAAACGC ATTGAACTGT TGGTGTATTT AGCCGAAGAG
TCCGATTGGG ATCCGCTAAA GGCCTTTTTA GCCCATTACA CCCCAGCGCA GATGAATATC
ACCATAGATG CTGAGTATCC TGTGGTTACC GCCGAAAAGG GTTGGAGTAA GATTGGCTTT
ACTGTACCGA ATCTCGAGTT AACGCAGGAG CAGGGCGCGG CAGCGAATGT TCCGAGCCTA
ACGGCATTTT CCGGCGGCTA TTTTGCAAGC CAAGTACCAC AGCAAGCCGA GGCTAAAGTT
CATGCCATCA CCCCAAGCTT GTTTGAAAAA TTACAAACTA GCGCCACCAA CCAGCAGGGG
ATGAAGTATC GATTCGAGCG AACTTGCGAG CAGGTCGTGT GCGACTTGCA TATTTTTGCC
GACGGTAAGG CGGCCCATTC CTCCACACCA GAAGATGGGG TGAATGCCGT GACGCATTTG
GCCGCATTAC TGCAGCCATA CACTTGGCCA AAAACCACGG CAGCACTCAC TGTGGCTGCC
ATGAATGAGT TAGTGGGGTT GGGGATTTAT GCCGAGCAGT TTGGCGAGCT GGCCTATAAA
GATGATTTTA TGGGCGCTTT AACGCTTGCC CCCACTGTCG TTGCGCAAAC GAGCAAAGGG
ACGGAAGTCA CCATTAATTT ACGTCGCCCT GTGGGCAAAA CGCCTGAGTT ACTCTCAGCC
CAAGCCAAGG ACGCGCTGAA CAAATGGCAA GCTGAGCATC AAGTGACACT CATCGACGTA
GAAAGTTATT GGGGCGAGCC TATGGTGATG AAGGATGCAC CGCATCAACA GACCTTACTC
GATGTATTTG CCCACTTTAC CGGCATAGCA TCTCCCAAAC CTGTGGCCAT TGGCGGCTCA
ACCAACAGTA AATTATTCCC CAACGCCTTA AGTTTTGGCC CCGCCATGCC GGGCGTGGAA
TACACTGGCC ACACGGAGAA AGAATTTATT ACCCATAAAC AGTTTATGCT GAATCTGAAA
ATGTACACCG CCGCCTTTAT TGAGTTAACT GCTGCAAAAT AG
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| Protein sequence | MELPQFNCTS LYRRFSYSLL AAALWTSTQA AASPITLSQD ALKVADYAVS TYDAQMVESL
AHLISFNTQA VEGQTPDTNP AFIGFKSSLK SLSQELGLDY ADHGYVVLIG LDANVVDAQR
SQVEKLGIVT HGDVQPANPA LWAKSPYVLD TESEPGKLIG RGTEDDKGAI VTAMYAMKAI
KDKQLKREKR IELLVYLAEE SDWDPLKAFL AHYTPAQMNI TIDAEYPVVT AEKGWSKIGF
TVPNLELTQE QGAAANVPSL TAFSGGYFAS QVPQQAEAKV HAITPSLFEK LQTSATNQQG
MKYRFERTCE QVVCDLHIFA DGKAAHSSTP EDGVNAVTHL AALLQPYTWP KTTAALTVAA
MNELVGLGIY AEQFGELAYK DDFMGALTLA PTVVAQTSKG TEVTINLRRP VGKTPELLSA
QAKDALNKWQ AEHQVTLIDV ESYWGEPMVM KDAPHQQTLL DVFAHFTGIA SPKPVAIGGS
TNSKLFPNAL SFGPAMPGVE YTGHTEKEFI THKQFMLNLK MYTAAFIELT AAK
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