| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2297 |
|---|
| Symbol | |
|---|
| ID | 4252868 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2739706 |
|---|
| End bp | 2741445 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638118922 |
|---|
| Product | gamma-glutamyltransferase 1 |
|---|
| Protein accession | YP_734425 |
|---|
| Protein GI | 113970632 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0405] Gamma-glutamyltransferase |
|---|
| TIGRFAM ID | [TIGR00066] gamma-glutamyltranspeptidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0286048 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGCG CAGGAACTTT TAGACCTCTT ATTCTCGCCA TTGCCATGGC ACTGCCTTTG
TTGTCTTCGC CCACTCTCCA TGCCGAAGAA CCTTCGATTT TCAGCCAAAT GGCCACGGCA
CAACCCGTAT GGGCAAAACA TGGAATGGTC GCCAGCCAAG AAGCGCTGGC AAGCCGCACT
GGCATCGAAA TTTTGAAGCA AGGCGGTAAT GCCGTCGATG CTGCGGTGGC GGTCGCATTC
AGTTTAGCCG TCACGCTACC CCGCGCGGGC AATATTGGTG GTGGTGGCTT TATGCTTGTC
CATCTGGCTA AAGAAAACAA AACCATCGCC ATCGATTACC GTGAAATGGC GCCATCAAAG
GCGAAAAAAG ACATATTCCT CGATGAGAAT GGCGATGCGG TAACTAAATT AAGCCGTGAA
CATGGCCTTG CAGTCGGCGT CCCCGGCACT GTGATGGGCA TGAGTTTAGC CCTTGAAAAA
TATGGCACGA TGACCATGGC GCAAGTCACG GCGCCCGCCA TCAAAATGGC ACAGGAAGGC
ATTAGCGTGA CCCCAGATCT TGCGGTATCC CTTGCAGGCT TAAAGCGCCG CATGAGCCAA
TGGCCCAGCA CGGCAACCAT CTTCTATAAG GCCGACGGTA GTGACTACCA AGTGGATGAT
ATTTTAAAAC AGCCAGAACT CGCCCACTCC CTGCAACTTA TCGCCGAGAA AGGCACTAAA
GGGTTCTACG AAGGTGAAAC TGCGGAGAAA CTGGTTAAGG CCGTGCAAGA TGCTGGCGGC
ATCATGACCT TAGCGGATTT AGAACACTAT AAGGCCGTCG AGCGTGAACC GGTTCGCGGT
CAGTACCGTG GGTATGACGT GGTTTCTATG CCACCACCAT CCTCGGGCGG CGTGCACATT
GTCGAGATGC TCAATGTGTT GCAGCAGTTC CCTATCGATA AGTTCGGTCA CAACACGGCG
CAAACCATTC ATGTCATGGC CGAAACCATG AAACATGCCT ACGCCGATCG CAGCGAATAC
TTAGGCGATC CCGATTTTTA TAAGGTGCCC GTCAAGCAGT TAACCAATAA GGACTACGCC
AAAAAAATCG CCAGCCAAAT TGCGCTAAAT AAAACTACGC CCAGCACCGA AATCAAACCC
GGCAATCTAG CGCCCTATGA GAGTGACCAA ACCACCCACT TCTCGGTGGT CGATAAATGG
GGCAATGCAG TGTCTAACAC TTACACCTTA AACTTTAGCT ACGGCTCGGG TTTAGTCGCC
AAAGGCACGG GCATTTTACT CAATAACGAA ATGGATGATT TTTCCGCAAA ACCCGGCACA
CCTAACGGTT ATGGCCTAGT GGGTGGCGAT GCCAACGCGG TGGAAGGTAA TAAACGTCCG
TTGAGCTCAA TGAGCCCAAC CATAGTGATG AAAGACGGCA AACCCTTCTT AGTTACGGGC
AGCCCAGGCG GTTCACGCAT CATTACCACC ACGCTGCAAA TCATTATGAA TGTAATTGAT
CACGGCTTAA ACATTGCCGA AGCCAGCAAT GCCGCGCGGG TACACCACCA ATGGCTACCC
GATGAACTGC GAGTCGAAAG CAGCCTGAAC CGCGATACCA TTTCGTTACT CGAAGCTAAA
GGCCATAAGG TGAAAGTGCA ATCGGCCATG GGTAGCACTC AATCCATCAT GGTGACAGAC
CAAGGGATTT TTGGCGCCTC TGACCCACGC CATTCGGGTA GCGAAGCCGT CGGTTACTAA
|
|---|
| Protein sequence | MRRAGTFRPL ILAIAMALPL LSSPTLHAEE PSIFSQMATA QPVWAKHGMV ASQEALASRT
GIEILKQGGN AVDAAVAVAF SLAVTLPRAG NIGGGGFMLV HLAKENKTIA IDYREMAPSK
AKKDIFLDEN GDAVTKLSRE HGLAVGVPGT VMGMSLALEK YGTMTMAQVT APAIKMAQEG
ISVTPDLAVS LAGLKRRMSQ WPSTATIFYK ADGSDYQVDD ILKQPELAHS LQLIAEKGTK
GFYEGETAEK LVKAVQDAGG IMTLADLEHY KAVEREPVRG QYRGYDVVSM PPPSSGGVHI
VEMLNVLQQF PIDKFGHNTA QTIHVMAETM KHAYADRSEY LGDPDFYKVP VKQLTNKDYA
KKIASQIALN KTTPSTEIKP GNLAPYESDQ TTHFSVVDKW GNAVSNTYTL NFSYGSGLVA
KGTGILLNNE MDDFSAKPGT PNGYGLVGGD ANAVEGNKRP LSSMSPTIVM KDGKPFLVTG
SPGGSRIITT TLQIIMNVID HGLNIAEASN AARVHHQWLP DELRVESSLN RDTISLLEAK
GHKVKVQSAM GSTQSIMVTD QGIFGASDPR HSGSEAVGY
|
|---|
| |