Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2271 |
Symbol | |
ID | 4252842 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 2716152 |
End bp | 2716793 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638118896 |
Product | hypothetical protein |
Protein accession | YP_734399 |
Protein GI | 113970606 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.267798 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCTGCTT TCCCTTGTAT CGACATTCCC TTCGATAAAC GTCACCTCTG TTGGTTTTGC GGCGAGCCCT GCAAAGACCG ATTGGATTAT CAAGCCGAGT CACACGCGCC CCACCCAGCA TTGGCCGTCC CTTGCTGCGC CGAATGCTTA AAACTGGCCC AAAAACACAC CTTAACTTCG ATTTGGGACT GCCGTGTGGC GGTTAAAGAT GCCCTAATGA GCATTTATGC CAAGCACTTA GCCATTGGGA TTAATTGGAC GGAGGAAGAA CTAGCCGAGT CTGAGTTCTC CTGCAAAGTG TTTGAAGGTT TTAAAAAAAG CGCTTGGATG ATGTATCAAA TTGCCCGCGA CAGGATTAAC TTTCCGGGCT GGCCGATACA ACTTGAAGGG GTCGAACTCG AATGCCAGTT AGACAGTACC CGCTTTGAGT TTGATGGGGT AACTTACACT TCGTTGCCCG CGGCAATTCA CTATTACAGT CAACAATTTT GCTTAGATCC GCTGTTTTTT GCCGAGCTGA TAAGGTTAGT CGGTCGGCAG AGATTTAACT ATGCCCTTAG GCTTGCCCGG ATCCATATCG CGGCCACCAA AGAAATGAAG CGGCAGGTCC TAGCCGATGT CAAAGCTGAA GTGACTGAAT AG
|
Protein sequence | MSAFPCIDIP FDKRHLCWFC GEPCKDRLDY QAESHAPHPA LAVPCCAECL KLAQKHTLTS IWDCRVAVKD ALMSIYAKHL AIGINWTEEE LAESEFSCKV FEGFKKSAWM MYQIARDRIN FPGWPIQLEG VELECQLDST RFEFDGVTYT SLPAAIHYYS QQFCLDPLFF AELIRLVGRQ RFNYALRLAR IHIAATKEMK RQVLADVKAE VTE
|
| |