| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2246 |
|---|
| Symbol | nadE |
|---|
| ID | 4252817 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2686847 |
|---|
| End bp | 2687737 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638118871 |
|---|
| Product | NAD synthetase |
|---|
| Protein accession | YP_734374 |
|---|
| Protein GI | 113970581 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0171] NAD synthase |
|---|
| TIGRFAM ID | [TIGR00552] NAD+ synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000924504 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.05165 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAACGT TAGCCGAATC ACTGCTCCCA ATAACAGCGA ATATTAAGGT GGAATTTTCG
GTGAAAGCGC AGATCTTAAC AGAAATGAAG GTACTCAAGA CAATCGATCC TGAGTTCGAA
GTGCAGCGCC GTGTGGCGTT TATTAAATCT AAACTGCAAG CAGCCCGCAG CAAAGCCTTG
GTCCTTGGGA TCAGCGGTGG TGTGGATTCG TCCACCGCAG GGCGTTTATG CCAGTTGGCC
GTTGATAGCC TCAATAGCGA GCATCCAGAC GGCGGCTATC AGTTTATTGC GGTGCGCTTA
CCCTATCAAA TTCAAAAAGA TGAGCACGAA GCTCAGCAAG CTTGCCAATT TATTCAGCCG
ACCAAATTAG TCACCATCAA TGTGCATCAA GGGGTCGATG GTGTGCATCA AGCCACCTTA
ACGGCCTTTG TCGAAGCGGG ATTGCATTCA CCGGATGCGG CTAAAGTCGA TTTTATTAAA
GGTAACGTGA AAGCGCGGAT GCGCATGATT GCCCAGTATG AGTTAGCCGG TTTAGTGGGT
GGCTTAGTGG TGGGGACAGA TCATAGCGCC GAGAATATCA CTGGTTTTTA TACTAAATGG
GGCGATGGTG CCTGCGATCT GGCGCCTTTA TTTGGCCTCA ACAAACGCCA AGTGCGTCAG
GTAGCGGCGT ATTTAGGCGC ACCAGAGACC TTAGTCTATA AAGCACCAAC CGCGGATTTG
GAAGATAATC AACCGCTACT CGAAGATGAA GTGGCGCTCG GGCTGACCTA CGAGCAAATC
GATGATTTCC TCGAAGGGAA AGCCGTCGAT AAGGCCGTGG AAGAGAAACT TATCAATATC
TACCAGGCCA CGCAGCATAA GCGTCAACCT ATCCCCACTA TTTACGATTA A
|
|---|
| Protein sequence | MITLAESLLP ITANIKVEFS VKAQILTEMK VLKTIDPEFE VQRRVAFIKS KLQAARSKAL
VLGISGGVDS STAGRLCQLA VDSLNSEHPD GGYQFIAVRL PYQIQKDEHE AQQACQFIQP
TKLVTINVHQ GVDGVHQATL TAFVEAGLHS PDAAKVDFIK GNVKARMRMI AQYELAGLVG
GLVVGTDHSA ENITGFYTKW GDGACDLAPL FGLNKRQVRQ VAAYLGAPET LVYKAPTADL
EDNQPLLEDE VALGLTYEQI DDFLEGKAVD KAVEEKLINI YQATQHKRQP IPTIYD
|
|---|
| |